DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ggamma1 and gng4

DIOPT Version :9

Sequence 1:NP_523662.1 Gene:Ggamma1 / 35881 FlyBaseID:FBgn0004921 Length:70 Species:Drosophila melanogaster
Sequence 2:NP_001165066.1 Gene:gng4 / 779661 XenbaseID:XB-GENE-987532 Length:75 Species:Xenopus tropicalis


Alignment Length:74 Identity:31/74 - (41%)
Similarity:44/74 - (59%) Gaps:6/74 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DVMS----SSLQQQRVVVEQLRREAAIDRQTISESCAKMMKYITEHEQEDYLLTGFTSQKVNPFR 62
            |.||    :|:.|.|..||||:.||.:||..:|::.|.:|.|...|.:||.|:....:.: ||||
 Frog     3 DSMSNNSTTSISQARKAVEQLKMEACMDRIKVSKAAADLMAYCDAHVREDPLILPVPASE-NPFR 66

  Fly    63 EKS-SCTVL 70
            ||. .||:|
 Frog    67 EKKFFCTIL 75

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ggamma1NP_523662.1 GGL 8..65 CDD:238024 23/56 (41%)
gng4NP_001165066.1 GGL 13..75 CDD:128520 26/62 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 55 1.000 Domainoid score I10936
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 57 1.000 Inparanoid score I5241
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1581168at2759
OrthoFinder 1 1.000 - - FOG0000162
OrthoInspector 1 1.000 - - mtm9382
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.060

Return to query results.
Submit another query.