DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8272 and AT2G17020

DIOPT Version :10

Sequence 1:NP_001260812.1 Gene:CG8272 / 35875 FlyBaseID:FBgn0033337 Length:710 Species:Drosophila melanogaster
Sequence 2:NP_565400.1 Gene:AT2G17020 / 816205 AraportID:AT2G17020 Length:656 Species:Arabidopsis thaliana


Alignment Length:614 Identity:137/614 - (22%)
Similarity:224/614 - (36%) Gaps:218/614 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 MLGVLPHLH----SLSLKRCLPLFMSGSFLDSYNNSCPDLNDLASNLAGIKELTLCENQYLTDAI 182
            :|...|:.|    |||::...||......|.|....|..|.:.|.:                  |
plant    60 VLTFTPNFHIFNVSLSMETVRPLLFPNQQLSSLKLDCGRLGNSAID------------------I 106

  Fly   183 LMRLTSFMPSLEAINMSGCHIAFHNAIHRRFYPATSSSDHVLPSESVLTFKFILTILNLQRRTLR 247
            |:|     |||..|::..|         |.|     |.|             :::.:..:.:.||
plant   107 LVR-----PSLREISLHNC---------RDF-----SGD-------------LISEIGRKCKDLR 139

  Fly   248 VLNFSHTL--IGQAL--LALCDLNLQLQRLYLAGCRQLNCTTILNFLATQPQLCALDLSATMCVN 308
            :|......  :|:::  .||.||        |.||..|....::           .|||..:...
plant   140 LLCLGSVAEKVGRSISRCALEDL--------LNGCSHLEVLALM-----------FDLSLYLRPG 185

  Fly   309 DENLAALVQTNPQLEHLKVNGCLSITNAGAIHLAKLKCLKSLDISNCDN--LTSSGIIEGIASEE 371
            |..:..||  :.:|.||::.   .||:.....|     |.|.:||..|:  :|:|.:::.     
plant   186 DGRIFGLV--SDRLTHLELG---HITSRMMTQL-----LTSTEISGQDSNRVTTSTVLQN----- 235

  Fly   372 NPVIQELNVSYLQICEECIKAIASNLRCLRSLHLNHCVNGATDEAIQSVIGQLRWLRELSLE--- 433
               :|.|.:|...|.:..:|||:.:|..|..|.                      :|:..||   
plant   236 ---VQRLRLSVDCITDAVVKAISKSLPSLIDLD----------------------IRDAPLEDPR 275

  Fly   434 HCSGLTDAALTGIN----ISKLEMSRKQSGSQVSSMDNFYPPYSNTLAER------DSLAGSLQS 488
            ..|.|||..|..||    :..|.:.|.|         .|:|.|...::::      |...| :::
plant   276 QVSDLTDFGLHEINQNGKLKHLSLIRSQ---------EFHPTYFRRVSDQGMLFLADKCLG-MET 330

  Fly   489 IKISLRSKAEDEIVRDARRKQAMLAAYEMNLIREDDFEGHNIQQLRGLRSLNLRGCNKISDVSLK 553
            |.:....:..|                                  .|.::: |..|..:|..|:.
plant   331 ICLGGFCRVTD----------------------------------AGFKTI-LHSCASLSKFSIY 360

  Fly   554 YG-----------------LKHIELRRLMLSNCQQISLLGMEAMASSCPSIEELDLSDCYNITDK 601
            :|                 |.|:.|||     |..::...::.:|||. .:|.|||..|.|:.|:
plant   361 HGPKLTDLVFHDILATTLSLSHVSLRR-----CHLLTDHAIQKLASSL-KLENLDLRGCRNLRDE 419

  Fly   602 TIQVVTSKLPRLKALHI-------SGCSQLTEHTLDAIITNCSCLQTLSIYRCRSMYTDLEERL- 658
            |:..| |.||:||.|.:       :|.|.|.|..||:::       :||:..||::.......| 
plant   420 TLTAV-SHLPKLKVLLLDGADISDTGLSYLKEGVLDSLV-------SLSVRGCRNLTDKFMSTLF 476

  Fly   659 --SGVKTLRNLNMDNLTSIDNAEFFRLKK 685
              |....||.|::.||.::.:|..|.|.|
plant   477 DGSSKLALRELDLSNLPNLTDAAIFALAK 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8272NP_001260812.1 F-box_SF 11..58 CDD:459239
leucine-rich repeat 129..166 CDD:275381 11/40 (28%)
leucine-rich repeat 167..192 CDD:275381 3/24 (13%)
leucine-rich repeat 193..244 CDD:275381 7/50 (14%)
C2 <231..274 CDD:472691 8/46 (17%)
leucine-rich repeat 246..269 CDD:275381 8/26 (31%)
AMN1 269..440 CDD:187754 38/175 (22%)
leucine-rich repeat 270..295 CDD:275381 4/24 (17%)
leucine-rich repeat 296..319 CDD:275381 6/22 (27%)
leucine-rich repeat 322..346 CDD:275381 6/23 (26%)
leucine-rich repeat 347..399 CDD:275381 15/53 (28%)
leucine-rich repeat 400..426 CDD:275381 2/25 (8%)
leucine-rich repeat 427..535 CDD:275381 20/120 (17%)
AMN1 515..>642 CDD:187754 36/150 (24%)
leucine-rich repeat 536..560 CDD:275381 7/40 (18%)
leucine-rich repeat 561..586 CDD:275381 7/24 (29%)
leucine-rich repeat 587..612 CDD:275381 11/24 (46%)
leucine-rich repeat 613..638 CDD:275381 9/31 (29%)
leucine-rich repeat 639..663 CDD:275381 6/26 (23%)
AT2G17020NP_565400.1 F-box_FBXL4 23..70 CDD:438889 3/9 (33%)
leucine-rich repeat 53..87 CDD:275381 8/26 (31%)
leucine-rich repeat 89..111 CDD:275381 8/44 (18%)
leucine-rich repeat 112..137 CDD:275381 7/51 (14%)
leucine-rich repeat 138..168 CDD:275381 11/37 (30%)
leucine-rich repeat 169..215 CDD:275381 13/66 (20%)
leucine-rich repeat 236..260 CDD:275381 8/23 (35%)
AMN1 <246..394 CDD:187754 39/219 (18%)
leucine-rich repeat 261..292 CDD:275381 12/52 (23%)
leucine-rich repeat 294..315 CDD:275381 6/29 (21%)
leucine-rich repeat 328..353 CDD:275381 5/59 (8%)
AMN1 337..497 CDD:187754 48/208 (23%)
leucine-rich repeat 354..379 CDD:275381 3/24 (13%)
leucine-rich repeat 380..404 CDD:275381 9/29 (31%)
leucine-rich repeat 405..429 CDD:275381 11/24 (46%)
leucine-rich repeat 430..455 CDD:275381 8/24 (33%)
leucine-rich repeat 456..481 CDD:275381 6/31 (19%)
leucine-rich repeat 482..509 CDD:275381 9/24 (38%)
leucine-rich repeat 510..529 CDD:275381
Blue background indicates that the domain is not in the aligned region.

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