DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8272 and amn1

DIOPT Version :9

Sequence 1:NP_001260812.1 Gene:CG8272 / 35875 FlyBaseID:FBgn0033337 Length:710 Species:Drosophila melanogaster
Sequence 2:NP_001038919.1 Gene:amn1 / 751744 ZFINID:ZDB-GENE-060825-13 Length:249 Species:Danio rerio


Alignment Length:215 Identity:65/215 - (30%)
Similarity:108/215 - (50%) Gaps:29/215 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   476 LAERDSLAGSLQSIKISLRSKAEDEIVRDARRKQAMLAAYEMNLIREDDFEG----HNIQQL--R 534
            :|..|||. ||.:..::.|::..::|       :.:.|:.:..|:|.....|    .||.||  .
Zfish     1 MATIDSLM-SLCAFSVAQRAEKYEDI-------RMLPASVKDRLLRIMTSYGTVTDSNISQLVHS 57

  Fly   535 GLRSLNLRGCNKISDVSLKYGLKHIELRRLMLSNCQQISLLGMEAMASSCPSIEELDLSDCYNIT 599
            |..:|:|:.| ||||.:||. :..:.||.::|..|.:|:..|:|.:|..||.::.:||:.|..:|
Zfish    58 GTHTLDLQNC-KISDSALKQ-INSLHLRTILLRGCAEITSEGLEVLAPRCPYLQVVDLTGCTAVT 120

  Fly   600 DKTIQVVTSKLPRLKALHISGCSQLTEHTLDAIITNCSCLQTLSIYRCRSMYTDLEERLSGVKT- 663
            |..||.:......|:.:.:.|||.|::..|..:..||..|.  |||...:..||  :.:.|:.| 
Zfish   121 DSGIQALARHCKCLEVISLRGCSALSDKALLELGGNCKMLH--SIYFSGTEVTD--QGVIGLATG 181

  Fly   664 -----LRNLNM---DNLTSI 675
                 |:.|.|   .|||.:
Zfish   182 VCSCSLKELQMVRCRNLTDL 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8272NP_001260812.1 AMN1 269..440 CDD:187754
leucine-rich repeat 270..295 CDD:275381
leucine-rich repeat 296..319 CDD:275381
leucine-rich repeat 322..346 CDD:275381
leucine-rich repeat 347..399 CDD:275381
leucine-rich repeat 400..426 CDD:275381
leucine-rich repeat 427..535 CDD:275381 16/64 (25%)
AMN1 515..>642 CDD:187754 43/132 (33%)
leucine-rich repeat 536..560 CDD:275381 9/23 (39%)
leucine-rich repeat 561..586 CDD:275381 9/24 (38%)
leucine-rich repeat 587..612 CDD:275381 7/24 (29%)
leucine-rich repeat 613..638 CDD:275381 8/24 (33%)
leucine-rich repeat 639..663 CDD:275381 7/23 (30%)
F-box-like 12..>44 CDD:289689
leucine-rich repeat 129..166 CDD:275381
leucine-rich repeat 167..192 CDD:275381
leucine-rich repeat 193..244 CDD:275381
C2 <231..274 CDD:301316
leucine-rich repeat 246..269 CDD:275381
amn1NP_001038919.1 AMN1 33..248 CDD:187754 56/175 (32%)
leucine-rich repeat 59..72 CDD:275381 6/13 (46%)
leucine-rich repeat 82..107 CDD:275381 9/24 (38%)
leucine-rich repeat 108..133 CDD:275381 7/24 (29%)
leucine-rich repeat 134..159 CDD:275381 8/24 (33%)
leucine-rich repeat 160..186 CDD:275381 8/29 (28%)
leucine-rich repeat 187..212 CDD:275381 6/15 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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