DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8272 and Skp2

DIOPT Version :10

Sequence 1:NP_001260812.1 Gene:CG8272 / 35875 FlyBaseID:FBgn0033337 Length:710 Species:Drosophila melanogaster
Sequence 2:NP_001099886.1 Gene:Skp2 / 294790 RGDID:1562456 Length:423 Species:Rattus norvegicus


Alignment Length:382 Identity:87/382 - (22%)
Similarity:140/382 - (36%) Gaps:96/382 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 YDDLPLEIVLKIFSYLGYSDLQAAGSTCQRWH---------AALDQAEFNQRTRVCFSKVVLSDQ 66
            :|.||.|::|.|||.|...:|......|:||:         .:||.|..|....|...      .
  Rat    97 WDSLPDELLLGIFSCLCLPELLRVSGVCKRWYRLSLDESLWQSLDLAGKNLHPDVTVR------L 155

  Fly    67 LSPGVDLMRCERRFQHFLFEDVTLGQVKELMRFMGRTAQSLALDNVDLNDKQFYGMLGVLPHLHS 131
            ||.||...||.|.|.     :..||:     .|.....|.:.|.|..:|....:|:|.....|.:
  Rat   156 LSRGVVAFRCPRSFM-----EQPLGE-----SFSSFRVQHMDLSNSVINVSNLHGILSECSKLQN 210

  Fly   132 LSLKRCLPLFMSGSFLDSYNNSCPDLNDLASNLAGIKELTLCENQYLTDAILMRLTSFMPSLEAI 196
            ||             |:....|.|.:..||.| ..:..|.||.....:::.:..|.|....|:.:
  Rat   211 LS-------------LEGLQLSDPIVTTLAQN-ENLVRLNLCGCSGFSESAVATLLSSCSRLDEL 261

  Fly   197 NMSGCHIAFHNAIHRRFYPATSSSDHVLPSESVLTFKFILTILNLQRRTLRVLNFSHTLIGQALL 261
            |:|.|                                               .:|:...:..|:.
  Rat   262 NLSWC-----------------------------------------------FDFTEKHVQAAVA 279

  Fly   262 ALCDLNLQLQRLYLAGCRQ-LNCTTILNFLATQPQLCALDLSATMCVNDENLAALVQTNPQLEHL 325
            .|.|   .|.:|.|:|.|: |..|.:...:...|.|..||||.::.:.::......|.| .|:||
  Rat   280 HLPD---TLTQLNLSGYRKNLQKTDLCTLIKRCPNLVRLDLSDSIMLKNDCFPEFFQLN-YLQHL 340

  Fly   326 KVNGCLSITNAGAIHLAKLKCLKSLDISNCDNLTSSGIIEGIASEENPVIQELNVSY 382
            .::.|..|.....:.|.::..||:|.:.   .:...|.:: :..|..|.:| :|.:|
  Rat   341 SLSRCYDIIPETLLELGEIPTLKTLQVF---GIVPDGTLQ-LLREALPRLQ-INCAY 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8272NP_001260812.1 F-box_SF 11..58 CDD:459239 18/55 (33%)
leucine-rich repeat 129..166 CDD:275381 9/36 (25%)
leucine-rich repeat 167..192 CDD:275381 5/24 (21%)
leucine-rich repeat 193..244 CDD:275381 4/50 (8%)
C2 <231..274 CDD:472691 5/42 (12%)
leucine-rich repeat 246..269 CDD:275381 4/22 (18%)
AMN1 269..440 CDD:187754 30/115 (26%)
leucine-rich repeat 270..295 CDD:275381 7/25 (28%)
leucine-rich repeat 296..319 CDD:275381 6/22 (27%)
leucine-rich repeat 322..346 CDD:275381 6/23 (26%)
leucine-rich repeat 347..399 CDD:275381 9/36 (25%)
leucine-rich repeat 400..426 CDD:275381
leucine-rich repeat 427..535 CDD:275381
AMN1 515..>642 CDD:187754
leucine-rich repeat 536..560 CDD:275381
leucine-rich repeat 561..586 CDD:275381
leucine-rich repeat 587..612 CDD:275381
leucine-rich repeat 613..638 CDD:275381
leucine-rich repeat 639..663 CDD:275381
Skp2NP_001099886.1 F-box_FBXL1 97..137 CDD:438886 13/39 (33%)
leucine-rich repeat 137..167 CDD:275381 11/35 (31%)
leucine-rich repeat 183..207 CDD:275381 6/23 (26%)
AMN1 193..>345 CDD:187754 43/216 (20%)
leucine-rich repeat 208..231 CDD:275381 9/36 (25%)
leucine-rich repeat 232..257 CDD:275381 5/24 (21%)
leucine-rich repeat 258..283 CDD:275381 7/71 (10%)
leucine-rich repeat 285..311 CDD:275381 7/25 (28%)
leucine-rich repeat 312..336 CDD:275381 7/24 (29%)
leucine-rich repeat 337..356 CDD:275381 5/18 (28%)
Blue background indicates that the domain is not in the aligned region.

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