DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8272 and Fbxl4

DIOPT Version :10

Sequence 1:NP_001260812.1 Gene:CG8272 / 35875 FlyBaseID:FBgn0033337 Length:710 Species:Drosophila melanogaster
Sequence 2:NP_766576.1 Gene:Fbxl4 / 269514 MGIID:2140367 Length:621 Species:Mus musculus


Alignment Length:695 Identity:150/695 - (21%)
Similarity:241/695 - (34%) Gaps:201/695 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 YGMLGVLPHLHSLSLKRCLPLFMSGSFLDSY-----NNSCPDLN-----------DLAS------ 162
            :.||.||...:.:.|:|.......|..::|:     |:....||           |.:|      
Mouse     5 FPMLTVLTMFYYMCLRRRARTATRGDMMNSHRTIVSNSRTSPLNAEVVQYAKEVVDFSSHYGSEN 69

  Fly   163 -------NLAGIKELTLCENQYLTDAILMRLTSFMPSLEAINMSGCHIAFHNAIHRRFYPATSSS 220
                   ||||:..:......:...|:.....::.....:.::.          .||...:..|.
Mouse    70 SMSYTMWNLAGVPNVFPSSGDFTQTAVFRTYGTWWDQCPSASLP----------FRRTPSSFQSQ 124

  Fly   221 DHVLPSESVLTFKFILTILNLQRRTLRVLNFSHTLIGQALLALCDLN---------LQLQRLYLA 276
            |:|     .|||:     ..:....:.||...|......:|| |..|         ::.:.|:..
Mouse   125 DYV-----ELTFE-----QQVYPTAVHVLETYHPGAVIRILA-CSANPYSPNPPAEVRWEILWSE 178

  Fly   277 GCRQLNCTTILNFLATQPQLCALDLSATMCVNDENLAALVQTNPQLEHLKVNGCL----SITNAG 337
            ...::|.:....|   :|           |:...|.    .||  |..|:||..|    :..:|.
Mouse   179 RPMKVNASQARQF---KP-----------CIKQINF----PTN--LIRLEVNSSLLDYYTELDAV 223

  Fly   338 AIHLAKLKCLKSL--------DISNCDNLTSSGI--------IEGIASEENP-----------VI 375
            .:|..|.|.|.||        |:.:.|.....|.        ....|..:.|           :|
Mouse   224 VLHGTKDKPLLSLKTALVDMNDLEDDDYEEKDGCEMDALNKKFSSAALGDGPHNGYFDKLPYELI 288

  Fly   376 QELNVSYLQICEECIKAIASNL---RC---LRSLHLN------------------HCV------- 409
            | |.:::|.:.:.|..|....|   .|   |:.:|||                  .||       
Mouse   289 Q-LILNHLSLPDLCRLAQTCRLLHQHCCDPLQYIHLNLQPYWARLDDTSLEFLQARCVLVQWLNL 352

  Fly   410 NGATDEAIQSVIGQLRWLR---------ELSLEHCSGLTDAALTGINISKLEMSRKQSGSQVSSM 465
            :...:....||.|..|:|:         |||..|.  |.|..|..|:    ||........:||.
Mouse   353 SWTGNRGFISVSGFSRFLKVCGSELVRLELSCSHF--LNDTCLEVIS----EMCPNLQDLNLSSC 411

  Fly   466 DNFYPPYSNTLAERDSLAGSLQSIK--ISLRSKAEDEIVRDARRKQAMLAAYEMNLIREDDFEGH 528
            |...|.....:|:       |.|:|  :..|:|.|         :.|:|:.  :|...|      
Mouse   412 DKLPPQAFGHIAK-------LCSLKRLVLYRTKVE---------QTALLSI--LNFCAE------ 452

  Fly   529 NIQQLRGLRSLNLRGCNKISD---VSLKYGLKHIELRRLMLSNCQQISLLGMEAMASSCPSIEEL 590
                   |:.|:|..|..|.|   ::...|.|...||.|.|..|:.|:..|:..:||.|..:|||
Mouse   453 -------LQHLSLGSCVMIEDYDVIASMIGAKCKNLRTLDLWRCKNITENGIAELASGCVLLEEL 510

  Fly   591 DLSDCYNITDKT--IQVVTSKLPRLKALHISGCSQLTEHTLDAIITNCSCLQTLSIYRCRSMY-T 652
            ||..|..:...|  ...:..:||.|:.|.::....:.:..::.:.:||:.||.|.|...|.:. .
Mouse   511 DLGWCPTLQSSTGCFVRLARQLPNLQKLFLTANRSVCDTDIEELASNCTRLQQLDILGTRMVSPA 575

  Fly   653 DLEERLSGVKTLRNLNMDNLTSIDNAEFFRLKKRLDYXYFAAIFI 697
            .|.:.|...|.|..|::...:.|||.....|.     ..|..:||
Mouse   576 SLRKLLESCKDLSLLDVSFCSQIDNKAVLELN-----ASFPKVFI 615

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8272NP_001260812.1 F-box_SF 11..58 CDD:459239
leucine-rich repeat 129..166 CDD:275381 11/65 (17%)
leucine-rich repeat 167..192 CDD:275381 1/24 (4%)
leucine-rich repeat 193..244 CDD:275381 8/50 (16%)
C2 <231..274 CDD:472691 9/51 (18%)
leucine-rich repeat 246..269 CDD:275381 7/31 (23%)
AMN1 269..440 CDD:187754 49/241 (20%)
leucine-rich repeat 270..295 CDD:275381 3/24 (13%)
leucine-rich repeat 296..319 CDD:275381 2/22 (9%)
leucine-rich repeat 322..346 CDD:275381 8/27 (30%)
leucine-rich repeat 347..399 CDD:275381 15/81 (19%)
leucine-rich repeat 400..426 CDD:275381 9/50 (18%)
leucine-rich repeat 427..535 CDD:275381 26/118 (22%)
AMN1 515..>642 CDD:187754 35/131 (27%)
leucine-rich repeat 536..560 CDD:275381 8/26 (31%)
leucine-rich repeat 561..586 CDD:275381 10/24 (42%)
leucine-rich repeat 587..612 CDD:275381 8/26 (31%)
leucine-rich repeat 613..638 CDD:275381 4/24 (17%)
leucine-rich repeat 639..663 CDD:275381 7/24 (29%)
Fbxl4NP_766576.1 F-box_FBXL4 280..326 CDD:438889 12/46 (26%)
leucine-rich repeat 295..317 CDD:275381 5/21 (24%)
leucine-rich repeat 318..340 CDD:275381 4/21 (19%)
leucine-rich repeat 347..376 CDD:275381 5/28 (18%)
LRR 1 376..397 7/22 (32%)
leucine-rich repeat 377..402 CDD:275381 10/30 (33%)
AMN1 394..601 CDD:187754 61/241 (25%)
LRR 2 402..421 4/18 (22%)
leucine-rich repeat 403..427 CDD:275381 6/30 (20%)
LRR 3 427..448 7/31 (23%)
leucine-rich repeat 428..452 CDD:275381 7/34 (21%)
LRR 4 452..474 7/34 (21%)
leucine-rich repeat 453..480 CDD:275381 8/26 (31%)
LRR 5 480..501 7/20 (35%)
leucine-rich repeat 481..506 CDD:275381 10/24 (42%)
LRR 6 504..524 8/19 (42%)
leucine-rich repeat 507..534 CDD:275381 8/26 (31%)
LRR 7 532..558 4/25 (16%)
leucine-rich repeat 535..560 CDD:275381 4/24 (17%)
LRR 8 559..583 7/23 (30%)
leucine-rich repeat 561..586 CDD:275381 7/24 (29%)
LRR 9 584..609 7/29 (24%)
leucine-rich repeat 587..612 CDD:275381 7/29 (24%)
Blue background indicates that the domain is not in the aligned region.

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