DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8272 and Lrrc29

DIOPT Version :9

Sequence 1:NP_001260812.1 Gene:CG8272 / 35875 FlyBaseID:FBgn0033337 Length:710 Species:Drosophila melanogaster
Sequence 2:NP_001355337.1 Gene:Lrrc29 / 234684 MGIID:2443262 Length:621 Species:Mus musculus


Alignment Length:663 Identity:183/663 - (27%)
Similarity:291/663 - (43%) Gaps:106/663 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 DDLPLEIVLKIFSYLGYSDLQAAGSTCQRWHAALDQA--EFNQRTRVCFSKVVLSDQLSPGVDLM 74
            |.||||::..|.|:|..||.:.|....:.|:.|...|  |.|.|..:..|...||...|.|:..:
Mouse     3 DSLPLEMLTYILSFLPLSDQKEASLVSRTWYCAAQNALRETNVRYNIPVSSASLSAIKSLGLRGI 67

  Fly    75 RCERRFQHFLFEDVTL---------GQVKELMRF-MGRTAQSLALDNVDLNDKQFYGMLGVLPHL 129
            .|           ::|         .||.:.:.: :|...:||.|......:..|..::...|.|
Mouse    68 SC-----------ISLTNLDGSPASHQVLQSVAYHLGPHLESLCLGGGSPTEASFLALILGCPVL 121

  Fly   130 HSLSLKRCLPLFMSGSFL------DSYNNSCPDLNDLASNLAGIKELTLCENQYLTDAILMRLTS 188
            .:|.|..|..||.||:.|      .....:...|.||  ||||:::        |||.....|:|
Mouse   122 RTLDLSGCNSLFTSGTLLAQPETAQCVREALSGLRDL--NLAGLRD--------LTDLSFNHLSS 176

  Fly   189 FMPSLEAINMSGCHIAFHNAIHRRFYPATSSSDHVLPSESVLTFKFILTILNLQRRTLRVLNFSH 253
            ..||||.::::.||::|      ...|...|....:.|.|.|:|..:|..:..:..|||.|:.|.
Mouse   177 CFPSLERLSLAYCHLSF------ELSPTWGSISPQVSSPSQLSFHNLLKFIKERAGTLRALDLSG 235

  Fly   254 T-LIGQALLALCDL-NLQLQRLYLAGCRQLNCTTILNFLATQPQLCALDLSATMCVNDENLAALV 316
            | |..:||.||..: .|:|:.|||..||.|:...:......||.|.:||||....:.|..|.|:.
Mouse   236 TGLPPEALQALGQVTGLKLEELYLHSCRDLSSEAVTILCRQQPGLTSLDLSGCSDLTDGALLAVS 300

  Fly   317 QTNPQLEHLKVNGCLSITNAGAIHLAKLKCLKSLDISNCDNLTSSGIIEGIASEENP--VIQELN 379
            :....|.||.:.....:|:||...|..|:.|:|||::.|..::...:.:.:.|....  .:..|.
Mouse   301 RGLRHLRHLSLKKLQRLTDAGCAALGALRELQSLDMAECCLVSGRELAQVLGSVRRAPRALTSLR 365

  Fly   380 VSYLQICEEC-----IKAIASNLRCLRSLHLNHCVNGATDEAIQSVIGQLRWLRELSLEHCSGLT 439
            ::|....::.     |.|:..:|:.   |.|:.|: ..|::.:|::...|..|..|.|..|..|.
Mouse   366 LAYCSSLKDASVLSMIPALGPSLKV---LDLSSCM-ALTNQTMQAICTYLIHLSVLRLAWCKELQ 426

  Fly   440 DAALTGINISKLEMSRKQSGSQVSSMDNFYPPYSNTLAERDSLAGSLQSIKISLRSKAEDEIVRD 504
            |..|.|:        ::.|...|.|.                          .|..|.::| ..|
Mouse   427 DWGLLGL--------KEPSDEPVLSP--------------------------QLHQKVDNE-APD 456

  Fly   505 ARRKQAMLAAYEMNLIREDDFEGHNIQQLRGLRSLNLRGCNKISDVSLKYGLKHIELRRLMLSNC 569
            .:...:             :.:|.::..|:.|:.|:|..|:|::|.||...|:..:||:|.||..
Mouse   457 PQEPSS-------------EPQGSSLLMLQALQELDLTACSKLTDASLAKVLQFPQLRQLSLSLL 508

  Fly   570 QQISLLGMEAMASSCPSIEELDLSDCYNITDKTIQVVTSKLPRLKALHISGCSQLTEHTLDAIIT 634
            ...:..|:.|:|..|||:|.|.||.|.:::|:.........|||:.|::|.||||||.|||.|..
Mouse   509 PAFTDTGLVAVARGCPSLERLTLSHCSHLSDEGWAQAARLWPRLQHLNLSSCSQLTEQTLDTIGQ 573

  Fly   635 NCSCLQTLSIYRC 647
            .|..|:.|.:..|
Mouse   574 ACKQLRVLDVAMC 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8272NP_001260812.1 AMN1 269..440 CDD:187754 47/177 (27%)
leucine-rich repeat 270..295 CDD:275381 8/24 (33%)
leucine-rich repeat 296..319 CDD:275381 8/22 (36%)
leucine-rich repeat 322..346 CDD:275381 8/23 (35%)
leucine-rich repeat 347..399 CDD:275381 11/58 (19%)
leucine-rich repeat 400..426 CDD:275381 6/25 (24%)
leucine-rich repeat 427..535 CDD:275381 17/107 (16%)
AMN1 515..>642 CDD:187754 45/126 (36%)
leucine-rich repeat 536..560 CDD:275381 9/23 (39%)
leucine-rich repeat 561..586 CDD:275381 9/24 (38%)
leucine-rich repeat 587..612 CDD:275381 6/24 (25%)
leucine-rich repeat 613..638 CDD:275381 14/24 (58%)
leucine-rich repeat 639..663 CDD:275381 3/9 (33%)
F-box-like 12..>44 CDD:289689 12/31 (39%)
leucine-rich repeat 129..166 CDD:275381 14/42 (33%)
leucine-rich repeat 167..192 CDD:275381 5/24 (21%)
leucine-rich repeat 193..244 CDD:275381 12/50 (24%)
C2 <231..274 CDD:301316 15/44 (34%)
leucine-rich repeat 246..269 CDD:275381 10/24 (42%)
Lrrc29NP_001355337.1 F-box-like 3..38 CDD:372399 13/34 (38%)
leucine-rich repeat 70..83 CDD:275381 1/12 (8%)
LRR_RI <118..360 CDD:393385 79/257 (31%)
leucine-rich repeat 121..154 CDD:275381 9/32 (28%)
leucine-rich repeat 155..180 CDD:275381 12/34 (35%)
leucine-rich repeat 181..227 CDD:275381 12/51 (24%)
leucine-rich repeat 228..248 CDD:275381 10/19 (53%)
AMN1 240..428 CDD:187754 52/191 (27%)
leucine-rich repeat 254..277 CDD:275381 7/22 (32%)
leucine-rich repeat 280..305 CDD:275381 8/24 (33%)
leucine-rich repeat 306..360 CDD:275381 14/53 (26%)
leucine-rich repeat 331..356 CDD:275381 6/24 (25%)
leucine-rich repeat 361..387 CDD:275381 4/25 (16%)
leucine-rich repeat 388..413 CDD:275381 7/28 (25%)
leucine-rich repeat 414..474 CDD:275381 17/107 (16%)
AMN1 <475..589 CDD:187754 45/112 (40%)
leucine-rich repeat 475..525 CDD:275381 18/49 (37%)
leucine-rich repeat 526..551 CDD:275381 6/24 (25%)
leucine-rich repeat 552..577 CDD:275381 14/24 (58%)
leucine-rich repeat 578..603 CDD:275381 3/9 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167843077
Domainoid 1 1.000 73 1.000 Domainoid score I9263
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H133339
Inparanoid 1 1.050 170 1.000 Inparanoid score I4115
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46839
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003012
OrthoInspector 1 1.000 - - oto93158
orthoMCL 1 0.900 - - OOG6_109891
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R7617
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.730

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