DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8272 and B0564.9

DIOPT Version :9

Sequence 1:NP_001260812.1 Gene:CG8272 / 35875 FlyBaseID:FBgn0033337 Length:710 Species:Drosophila melanogaster
Sequence 2:NP_502528.2 Gene:B0564.9 / 178266 WormBaseID:WBGene00007208 Length:423 Species:Caenorhabditis elegans


Alignment Length:439 Identity:100/439 - (22%)
Similarity:178/439 - (40%) Gaps:107/439 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   310 ENLAALVQTNPQLEHLKVN-GCLSITNAGAIHLAKL--KC---LKSLDIS-NCDNLTSSGIIEGI 367
            :||.:  ::...:.||.|. .|.|:.. .::.:|.:  :|   |::||:. ..||...:||...:
 Worm    28 DNLVS--KSLKSMRHLDVQMHCPSVIR-DSVAMASVIAQCSYNLQTLDLKIRSDNAKYAGIPSDV 89

  Fly   368 ASEENPVIQELNVSYLQICEECIKAIASNLRCLRSLHLNHCVNGATDEAIQSVIGQL-RWLRELS 431
            ....| |:..:|               .|...||.||::.|  ..:..||.| .|.| ..:.|:|
 Worm    90 KIRRN-VMTSIN---------------ENATKLRKLHIDRC--RISPGAIGS-FGDLPDSIEEIS 135

  Fly   432 LEH----CSGLTDAALTGINISK-----LEMSRKQSGSQVSSM----DNFYPP------YSNTLA 477
            :.:    ||....|.:    |.|     |:..||....::|..    .:|:..      .|||:.
 Worm   136 ITNSMIECSEWDVATI----IRKSFGTLLKKCRKLRYFEISGQCLMNSHFHVDPKILQFISNTVE 196

  Fly   478 ERDSLAGSLQSIKISLRSKAEDEIVRDARRKQAMLAAYEMNLIREDDFE-----GHNIQQLRGLR 537
            ......|.    .:::.|.|   .::|.|.|...|   :.:.|...|.|     ...|..|...|
 Worm   197 HLAIAVGH----SLTINSLA---FLKDKRLKTLNL---QRSFISPCDLEHIVAMADTITHLDLSR 251

  Fly   538 SLNLRGCNKISDVSLKYGLKHIELRRLMLSNCQQISLLGMEAMASSCPSIEELDLSDCYNITDKT 602
            |:||..|.:|:::   ..|:|:.|:    :|.:.:....::.:..:|..:|||.|..|..:|..:
 Worm   252 SVNLLDCRQIAEL---VNLRHLSLK----NNKEGVRDDSLQLIIKNCSKLEELSLDCCEYLTVNS 309

  Fly   603 IQVVTSKLPRLKALHISGCSQLTEHTLDAI---ITNCSCLQTLSIYRCRSMYTDLEERLSGVKTL 664
            : :....|..||.|.:.|...:.    |::   |:.||.|..|:|..||.    :::|  |:..|
 Worm   310 L-ITLGNLNNLKQLSLPGIVNVD----DSVCLQISRCSKLTYLNINFCRR----VQKR--GLLCL 363

  Fly   665 RNLNMDNLTSIDNAEFFRLK--------------KRLDYXYFAAIFIVL 699
                :..|||:|:.|...::              |.:.. |..:|.|::
 Worm   364 ----LSCLTSLDHLEVLGIRAYSHHLLALHINFPKTIVSDYVESISIII 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8272NP_001260812.1 AMN1 269..440 CDD:187754 34/141 (24%)
leucine-rich repeat 270..295 CDD:275381
leucine-rich repeat 296..319 CDD:275381 2/8 (25%)
leucine-rich repeat 322..346 CDD:275381 6/26 (23%)
leucine-rich repeat 347..399 CDD:275381 11/52 (21%)
leucine-rich repeat 400..426 CDD:275381 10/26 (38%)
leucine-rich repeat 427..535 CDD:275381 27/131 (21%)
AMN1 515..>642 CDD:187754 32/134 (24%)
leucine-rich repeat 536..560 CDD:275381 8/23 (35%)
leucine-rich repeat 561..586 CDD:275381 3/24 (13%)
leucine-rich repeat 587..612 CDD:275381 7/24 (29%)
leucine-rich repeat 613..638 CDD:275381 7/27 (26%)
leucine-rich repeat 639..663 CDD:275381 7/23 (30%)
F-box-like 12..>44 CDD:289689
leucine-rich repeat 129..166 CDD:275381
leucine-rich repeat 167..192 CDD:275381
leucine-rich repeat 193..244 CDD:275381
C2 <231..274 CDD:301316
leucine-rich repeat 246..269 CDD:275381
B0564.9NP_502528.2 leucine-rich repeat 106..130 CDD:275381 10/26 (38%)
leucine-rich repeat 131..159 CDD:275381 7/31 (23%)
leucine-rich repeat 166..193 CDD:275381 2/26 (8%)
leucine-rich repeat 195..214 CDD:275381 3/25 (12%)
leucine-rich repeat 219..243 CDD:275381 5/26 (19%)
leucine-rich repeat 244..266 CDD:275381 8/24 (33%)
leucine-rich repeat 267..293 CDD:275381 5/29 (17%)
leucine-rich repeat 294..318 CDD:275381 7/24 (29%)
leucine-rich repeat 319..343 CDD:275381 7/27 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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