DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8272 and si:ch73-173p19.1

DIOPT Version :10

Sequence 1:NP_001260812.1 Gene:CG8272 / 35875 FlyBaseID:FBgn0033337 Length:710 Species:Drosophila melanogaster
Sequence 2:XP_002660968.3 Gene:si:ch73-173p19.1 / 100332407 ZFINID:ZDB-GENE-130530-952 Length:918 Species:Danio rerio


Alignment Length:521 Identity:114/521 - (21%)
Similarity:199/521 - (38%) Gaps:164/521 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 FYG------MLGVLPH-----LHSLSLKRCLPLFMSGSFLDSYNNSCPDLND----LASNLAGIK 168
            |:|      :|...|:     |..|....||...   |||:|     |.:.|    :.|||:.::
Zfish   515 FFGCPLQKFVLNCYPYTTNELLRQLRAFTCLKHL---SFLNS-----PLITDAGLSVLSNLSKLQ 571

  Fly   169 ELTLCENQYLTDAILMRLT-----SFMPSLEAINMSGCHIAFHNAIHRRFYPATSSSDHVLPSES 228
            .|.|.....|||:.|..:|     :|: :|:...:|...:..:      ....:|:...:..:::
Zfish   572 HLNLSSCSKLTDSCLQHITGLRSLTFL-ALDQTKVSDAGLLLY------LQSGSSALCQLSLNQT 629

  Fly   229 VLTFKFILTILNLQRRTLRVLNFSHTLIGQALLALCDLNLQLQRLYLAGC----RQLNCTTILNF 289
            .:| :..|.:|......||:|:..||.:.. :.||.:|. .||.|:|.|.    ..|.|      
Zfish   630 AIT-ESTLRVLPASVPQLRMLSIKHTKVSD-VSALAELK-NLQTLHLDGTGVQENSLQC------ 685

  Fly   290 LATQPQLCALDLSATMCVNDENLAALVQTNPQLEHLKVNGCLSITNAGAIHLAKLKCLKSLDISN 354
            ||:.|.|.||.| |.:.|.|.|....:....:|..|.:.|..|:|::|...|::...|..||:::
Zfish   686 LASHPSLSALSL-AGIPVADGNHTLEIIAGLRLTQLTLPGRHSVTDSGLSFLSRQTLLLELDLTD 749

  Fly   355 CDNLTSSGIIEGIASEENPVIQELNVSYLQICEECIKAIASNLRCLRSLHLNHCVNGATDEAIQS 419
            ...||..||.:                            .|::..|:.|.|::  ...:|..:|.
Zfish   750 YTQLTDHGITQ----------------------------LSSMTRLKKLSLSN--TQVSDSGLQG 784

  Fly   420 VIGQLRWLRELSLEHCSGLTDAALTGINISKLEMSRKQSGSQVSSMDNFYPPYSNTLAERDSLAG 484
            :| :|:.|:||.|:.      .|:|...::.|          ::.:     |:...:....:..|
Zfish   785 LI-RLKELQELCLDR------TAVTSRGVAAL----------ITHL-----PHLQVMGLASTQVG 827

  Fly   485 SLQSIKISLRSKAEDEIVRDARRKQAMLAAYEMNLIREDDFEGHNIQQLRGLRSLNLRGCNKISD 549
                          |.::|             ..|:       |..|.|:    ||| ...:|:|
Zfish   828 --------------DTVIR-------------RGLV-------HCPQLLK----LNL-SRTRITD 853

  Fly   550 VSLKYGLKHIELRRLMLSNCQ----QISLLGMEAMASSCPSI--------------EELDLSDCY 596
            ..||:      |.|:.||...    .::|:|:..:.|:||.:              ::.|..|.|
Zfish   854 QGLKF------LCRMQLSQVNLDGTGVTLVGIANLISACPHLSSVRASHTRAIPPDQQSDDDDDY 912

  Fly   597 N 597
            |
Zfish   913 N 913

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8272NP_001260812.1 F-box_SF 11..58 CDD:459239
leucine-rich repeat 129..166 CDD:275381 13/40 (33%)
leucine-rich repeat 167..192 CDD:275381 8/29 (28%)
leucine-rich repeat 193..244 CDD:275381 6/50 (12%)
C2 <231..274 CDD:472691 13/42 (31%)
leucine-rich repeat 246..269 CDD:275381 8/22 (36%)
AMN1 269..440 CDD:187754 44/174 (25%)
leucine-rich repeat 270..295 CDD:275381 9/28 (32%)
leucine-rich repeat 296..319 CDD:275381 8/22 (36%)
leucine-rich repeat 322..346 CDD:275381 7/23 (30%)
leucine-rich repeat 347..399 CDD:275381 8/51 (16%)
leucine-rich repeat 400..426 CDD:275381 7/25 (28%)
leucine-rich repeat 427..535 CDD:275381 15/107 (14%)
AMN1 515..>642 CDD:187754 24/101 (24%)
leucine-rich repeat 536..560 CDD:275381 7/23 (30%)
leucine-rich repeat 561..586 CDD:275381 8/28 (29%)
leucine-rich repeat 587..612 CDD:275381 4/25 (16%)
leucine-rich repeat 613..638 CDD:275381
leucine-rich repeat 639..663 CDD:275381
si:ch73-173p19.1XP_002660968.3 UBA_like_SF 6..43 CDD:473871
tolA 108..>163 CDD:236545
UBX 189..257 CDD:340466
leucine-rich repeat 545..569 CDD:275381 10/31 (32%)
LRR 548..859 CDD:443914 93/432 (22%)
leucine-rich repeat 570..594 CDD:275381 7/23 (30%)
leucine-rich repeat 595..620 CDD:275381 3/31 (10%)
leucine-rich repeat 621..645 CDD:275381 3/24 (13%)
leucine-rich repeat 646..691 CDD:275381 17/52 (33%)
leucine-rich repeat 692..766 CDD:275381 23/102 (23%)
leucine-rich repeat 717..742 CDD:275381 7/24 (29%)
leucine-rich repeat 767..790 CDD:275381 7/25 (28%)
leucine-rich repeat 791..815 CDD:275381 7/44 (16%)
leucine-rich repeat 816..840 CDD:275381 5/57 (9%)
leucine-rich repeat 841..863 CDD:275381 10/32 (31%)
leucine-rich repeat 864..888 CDD:275381 6/23 (26%)
Blue background indicates that the domain is not in the aligned region.

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