DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gcl and LOC499276

DIOPT Version :9

Sequence 1:NP_724708.1 Gene:gcl / 35864 FlyBaseID:FBgn0005695 Length:569 Species:Drosophila melanogaster
Sequence 2:XP_006230485.1 Gene:LOC499276 / 499276 RGDID:1562283 Length:342 Species:Rattus norvegicus


Alignment Length:89 Identity:19/89 - (21%)
Similarity:35/89 - (39%) Gaps:14/89 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   261 EALKTQELLVNAGVETHAPSGDVVQWTYFTSRSEERSFLATPEGQPYVKVFQKLRTQYLTNHYMD 325
            |..||:|:.:|...::......|:     ..|::.:.||.....:.::..|.......:||...|
  Rat   241 EPTKTREVALNVIFKSEESKSCVL-----CHRNDRKPFLPVKRPERHITGFTNRNLFPITNFPGD 300

  Fly   326 LKIIYND----NIIPKE-----WL 340
            |.::..|    .|.|.:     ||
  Rat   301 LMLMNQDFRSKGIHPNDAIKIYWL 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gclNP_724708.1 BTB 56..163 CDD:279045
BTB 67..166 CDD:197585
LOC499276XP_006230485.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166336685
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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