DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gcl and gcl-1

DIOPT Version :9

Sequence 1:NP_724708.1 Gene:gcl / 35864 FlyBaseID:FBgn0005695 Length:569 Species:Drosophila melanogaster
Sequence 2:NP_502585.1 Gene:gcl-1 / 190457 WormBaseID:WBGene00013382 Length:496 Species:Caenorhabditis elegans


Alignment Length:535 Identity:139/535 - (25%)
Similarity:242/535 - (45%) Gaps:93/535 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 MNVAEVFSNRRKRKRSTDSSLGKDDPAQLDTTQPKKKKLLTTTQYIYKALFKEEKNSDVAVMALD 74
            |:|.|....||.|||..         |:....:.||...|.|..|:|:.||.:.:|||:.:.|..
 Worm    23 MDVYEESGPRRGRKRKA---------AKGSEIEMKKVAKLNTCAYVYQKLFLQGENSDIVLAACG 78

  Fly    75 KVWHLHKVYLSQSPYFYTMFNGTWREAQQNFIQITILDDRITVASLDAVFGSMYSDEIEIESADV 139
            :.|.:||:||.|:.:|.:||:|.|.|:....:|:.|.|..|....|::|.||:|.:||||:...:
 Worm    79 REWRVHKLYLKQTKFFESMFDGLWTESNSGRVQMEITDPNIDADGLNSVLGSLYHNEIEIDLDKI 143

  Fly   140 ISVLATATLFHLDGIIDKCAEVMVDNISPETAIQYYEAACQYGVVGVKKSTFQWFQINLLSIYSK 204
            ...:|.|:...||.:.|:|:|:|::.:|.:.|:::|:.:.:||:..|::.:.:........|.:.
 Worm   144 EGTVAAASYIVLDSVTDRCSEMMIEALSTKNAVRFYDVSTKYGLEKVREKSMEVLLHQFWKIMTD 208

  Fly   205 QPNLLRHISIELMSALTASPDLYVMQTEFSLYTLLRTWMFLRLHPDY----DPEDPVQRAEALKT 265
            :.. |..:..:|...|..||:|.:::.||.||.::::|:::|..||.    .||...|.|     
 Worm   209 REK-LNEVDRQLFVTLLNSPNLLIIEGEFDLYKVVKSWIYMREVPDCCKDDSPETFTQNA----- 267

  Fly   266 QELLVNAGVETHAPSGDVVQWTYFTSRSEERSFLATPEGQPYVKVFQKLRTQYLTNHYMDLKIIY 330
                                 :.|...|:...|:      .|..:|..||.:........:|.:.
 Worm   268 ---------------------SKFFKESKTSMFI------KYADIFASLRIEQFLTCSETIKTVK 305

  Fly   331 NDNIIPKEWLYRHIHNHWDALLRIDHGQEDCSPQQLDDEQFFENCMRCGRMLLEPGYQK-WRWTG 394
            :|.:||...:.......|.:||   ..:|.....::||::||:.|:|.||.|  ..:.| |||.|
 Worm   306 SDALIPLSIVDEMTSALWSSLL---ENEESPKTLEMDDDEFFKRCIRLGRSL--DSFPKCWRWIG 365

  Fly   395 FNFGMDLILIMDSRRLNIRRHHRHEHERVLSLQTKRKFMVRTTVTSINAQRQAVFTQTSEICSLS 459
            ||||:||:|                |....|:..||..:.:....|:|.:.:.|......||   
 Worm   366 FNFGVDLLL----------------HVNDYSVCIKRNCLNQKAPYSVNLKSKHVLHYRLVIC--- 411

  Fly   460 LEKNEEVPLMVLDPKLVHPLLISINMLVVMPPNQSFKEIVPLSEEATTSLSI--------PISEI 516
             :.|.::            |..|......|.|::: :.|..:||:..|.:|:        ||...
 Worm   412 -DSNGQI------------LYDSGKTTWEMKPDEA-RTIYRMSEDLATQISVHFQYLIHQPICST 462

  Fly   517 GANSDRPLSPSSADD 531
            |...::.|...::.|
 Worm   463 GHYVNKYLDDQNSTD 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gclNP_724708.1 BTB 56..163 CDD:279045 39/106 (37%)
BTB 67..166 CDD:197585 35/98 (36%)
gcl-1NP_502585.1 BTB_POZ_GCL 55..169 CDD:349614 42/113 (37%)
BACK 170..248 CDD:391941 18/78 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167248
Domainoid 1 1.000 92 1.000 Domainoid score I4823
eggNOG 1 0.900 - - E1_KOG4682
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H8021
Inparanoid 1 1.050 191 1.000 Inparanoid score I2554
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48664
OrthoDB 1 1.010 - - D1111791at2759
OrthoFinder 1 1.000 - - FOG0000347
OrthoInspector 1 1.000 - - oto19378
orthoMCL 1 0.900 - - OOG6_106864
Panther 1 1.100 - - LDO PTHR23231
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4362
SonicParanoid 1 1.000 - - X249
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.840

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