DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-SC2 and PGLYRP4

DIOPT Version :9

Sequence 1:NP_610410.1 Gene:PGRP-SC2 / 35862 FlyBaseID:FBgn0043575 Length:184 Species:Drosophila melanogaster
Sequence 2:NP_065126.2 Gene:PGLYRP4 / 57115 HGNCID:30015 Length:373 Species:Homo sapiens


Alignment Length:161 Identity:58/161 - (36%)
Similarity:93/161 - (57%) Gaps:1/161 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 IISKSEWGGRSATSKTSLANYLSYAVIHHTAGNYCSTKAACITQLQNIQAYHMDSLGWADIGYNF 87
            ::.:|.||.|. |....:.....|.:|.||||..|:....|...:::||::::|.|...||||||
Human   213 VVPRSVWGARE-THCPRMTLPAKYGIIIHTAGRTCNISDECRLLVRDIQSFYIDRLKSCDIGYNF 276

  Fly    88 LIGGDGNVYEGRGWNVMGAHATNWNSKSIGISFLGNYNTNTLTSAQITAAKGLLSDAVSRGQIVS 152
            |:|.||.:|||.||||.|:....::..::||:|:|.:......:|.:.||:.|:..|:.:|.:..
Human   277 LVGQDGAIYEGVGWNVQGSSTPGYDDIALGITFMGTFTGIPPNAAALEAAQDLIQCAMVKGYLTP 341

  Fly   153 GYILYGHRQVGSTECPGTNIWNEIRTWSNWK 183
            .|:|.||..|..|..||..::|.|.||.::|
Human   342 NYLLVGHSDVARTLSPGQALYNIISTWPHFK 372

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
PGRP-SC2NP_610410.1 PGRP 21..162 CDD:128941 49/138 (36%)
PGLYRP4NP_065126.2 PGRP 53..194 CDD:128941
PGRP 211..351 CDD:128941 49/138 (36%)
Interaction with murein 293..302 1/8 (13%)