DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-SC2 and PGRP-LF

DIOPT Version :10

Sequence 1:NP_610410.1 Gene:PGRP-SC2 / 35862 FlyBaseID:FBgn0043575 Length:184 Species:Drosophila melanogaster
Sequence 2:NP_648299.3 Gene:PGRP-LF / 39064 FlyBaseID:FBgn0035977 Length:369 Species:Drosophila melanogaster


Alignment Length:161 Identity:64/161 - (39%)
Similarity:96/161 - (59%) Gaps:1/161 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 GVTIISKSEWGGRSATSK-TSLANYLSYAVIHHTAGNYCSTKAACITQLQNIQAYHMDSLGWADI 83
            |:.|:.:|||.|...:.| ..|...:|..:|||||...|..:..||.:::.|||:||.|.||.||
  Fly    56 GLHILDRSEWLGEPPSGKYPHLKLPVSNIIIHHTATEGCEQEDVCIYRMKTIQAFHMKSFGWVDI 120

  Fly    84 GYNFLIGGDGNVYEGRGWNVMGAHATNWNSKSIGISFLGNYNTNTLTSAQITAAKGLLSDAVSRG 148
            |||||:||||.:|.||||::.|.|...:.:.|:.|:|:|.:......:.||.|||.|:.:.|...
  Fly   121 GYNFLVGGDGQIYVGRGWHIQGQHVNGYGAISVSIAFIGTFVNMEPPARQIEAAKRLMDEGVRLH 185

  Fly   149 QIVSGYILYGHRQVGSTECPGTNIWNEIRTW 179
            ::...|.:|.|||:..||.||..::..::.|
  Fly   186 RLQPDYHIYAHRQLSPTESPGQKLFELMQNW 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-SC2NP_610410.1 PGRP 21..162 CDD:128941 57/141 (40%)
PGRP-LFNP_648299.3 PGRP 57..199 CDD:128941 57/141 (40%)
PGRP 236..363 CDD:470657
Blue background indicates that the domain is not in the aligned region.

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