DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PGRP-SC2 and PGLYRP2

DIOPT Version :9

Sequence 1:NP_610410.1 Gene:PGRP-SC2 / 35862 FlyBaseID:FBgn0043575 Length:184 Species:Drosophila melanogaster
Sequence 2:NP_001350475.1 Gene:PGLYRP2 / 114770 HGNCID:30013 Length:634 Species:Homo sapiens


Alignment Length:177 Identity:65/177 - (36%)
Similarity:96/177 - (54%) Gaps:11/177 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 QAVLGVTII-SKSEWGGRSATSKTSLANY-LSYAVIHHTAGNY-----CSTKAACITQLQNIQAY 73
            :|.||...| .:..||......:..|... |.:..:|||   |     |:....|...::::|.|
Human   374 EAFLGCPAIHPRCRWGAAPYRGRPKLLQLPLGFLYVHHT---YVPAPPCTDFTRCAANMRSMQRY 435

  Fly    74 HMDSLGWADIGYNFLIGGDGNVYEGRGWNVMGAHATNWNSKSIGISFLGNYNTNTLTSAQITAAK 138
            |.|:.||.||||:|::|.||.|||||||:.:|||....||:..|::.:|||.....|.|.:...:
Human   436 HQDTQGWGDIGYSFVVGSDGYVYEGRGWHWVGAHTLGHNSRGFGVAIVGNYTAALPTEAALRTVR 500

  Fly   139 GLL-SDAVSRGQIVSGYILYGHRQVGSTECPGTNIWNEIRTWSNWKA 184
            ..| |.||..|.:...|.|.||||:..|:|||..:::.:|||.::.|
Human   501 DTLPSCAVRAGLLRPDYALLGHRQLVRTDCPGDALFDLLRTWPHFTA 547

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-SC2NP_610410.1 PGRP 21..162 CDD:128941 53/148 (36%)
PGLYRP2NP_001350475.1 PGRP 380..525 CDD:128941 53/147 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165152351
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1110472at2759
OrthoFinder 1 1.000 - - FOG0000842
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101717
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
54.750

Return to query results.
Submit another query.