DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-SC1a and PGRP-SB2

DIOPT Version :9

Sequence 1:NP_610407.1 Gene:PGRP-SC1a / 35859 FlyBaseID:FBgn0043576 Length:185 Species:Drosophila melanogaster
Sequence 2:NP_001261970.1 Gene:PGRP-SB2 / 39869 FlyBaseID:FBgn0043577 Length:191 Species:Drosophila melanogaster


Alignment Length:188 Identity:64/188 - (34%)
Similarity:94/188 - (50%) Gaps:31/188 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LLLAVLVCSQYMAQGVYVVSKAEW-----GGRGAKWTVGLGNYLSYAIIHHTAGSYCETRAQCNA 66
            |.||:::|...:|.| .:|.::.|     ..|..:..|.    :...|||||..:.|....||..
  Fly     3 LQLALVLCGLTLALG-QIVPRSSWCPVPISPRMPRLMVP----VRLIIIHHTVTAPCFNPHQCQL 62

  Fly    67 VLQSVQNYHMDSLGWPDIGYNFLIGGDGNVYEGRGWNNMGAHAAEWNPYSIGISFLGNY----NW 127
            ||:.::..|| ...:.||||||||||||.:|||.|:...|.||..:|..||||:|:||:    ..
  Fly    63 VLRQIRADHM-RRKFRDIGYNFLIGGDGRIYEGLGFGIRGEHAPRYNSQSIGIAFIGNFQNAPGC 126

  Fly   128 DTLEPNMISAA---QQLLNDAVNRGQL-SSGYILYGH------RQVS--ATECPGTHI 173
            ....||..:|:   .||...    |.| :.|:.|.|:      ::|:  ||:..|.|:
  Fly   127 PNPHPNRCAASPGFAQLFRG----GSLPNEGHCLSGNTPSQRAQKVAKLATKALGFHM 180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-SC1aNP_610407.1 PGRP 22..163 CDD:128941 53/159 (33%)
PGRP-SB2NP_001261970.1 PGRP 18..>129 CDD:128941 43/115 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45440239
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1110472at2759
OrthoFinder 1 1.000 - - FOG0000842
OrthoInspector 1 1.000 - - otm26632
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11022
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.950

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