DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-SC1a and PGRP-LF

DIOPT Version :10

Sequence 1:NP_610407.1 Gene:PGRP-SC1a / 35859 FlyBaseID:FBgn0043576 Length:185 Species:Drosophila melanogaster
Sequence 2:NP_648299.3 Gene:PGRP-LF / 39064 FlyBaseID:FBgn0035977 Length:369 Species:Drosophila melanogaster


Alignment Length:199 Identity:68/199 - (34%)
Similarity:107/199 - (53%) Gaps:26/199 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VALLLAVLVCSQYMA-----------QGVYVVSKAEWGGRGAKWTVGLGNY------LSYAIIHH 52
            |.||:.|.:.:.|..           :|::::.::||.|....     |.|      :|..||||
  Fly    29 VILLMVVGLAAGYFMWMMSFSTHSPNKGLHILDRSEWLGEPPS-----GKYPHLKLPVSNIIIHH 88

  Fly    53 TAGSYCETRAQCNAVLQSVQNYHMDSLGWPDIGYNFLIGGDGNVYEGRGWNNMGAHAAEWNPYSI 117
            ||...||....|...::::|.:||.|.||.|||||||:||||.:|.||||:..|.|...:...|:
  Fly    89 TATEGCEQEDVCIYRMKTIQAFHMKSFGWVDIGYNFLVGGDGQIYVGRGWHIQGQHVNGYGAISV 153

  Fly   118 GISFLGNYNWDTLEP--NMISAAQQLLNDAVNRGQLSSGYILYGHRQVSATECPGTHIWNEIRGW 180
            .|:|:|.:  ..:||  ..|.||::|:::.|...:|...|.:|.|||:|.||.||..::..::.|
  Fly   154 SIAFIGTF--VNMEPPARQIEAAKRLMDEGVRLHRLQPDYHIYAHRQLSPTESPGQKLFELMQNW 216

  Fly   181 SHWS 184
            ..::
  Fly   217 PRFT 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-SC1aNP_610407.1 PGRP 22..163 CDD:128941 55/148 (37%)
PGRP-LFNP_648299.3 PGRP 57..199 CDD:128941 55/148 (37%)
PGRP 236..363 CDD:470657
Blue background indicates that the domain is not in the aligned region.

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