DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-SC1a and Pglyrp3

DIOPT Version :9

Sequence 1:NP_610407.1 Gene:PGRP-SC1a / 35859 FlyBaseID:FBgn0043576 Length:185 Species:Drosophila melanogaster
Sequence 2:XP_006501534.1 Gene:Pglyrp3 / 242100 MGIID:2685266 Length:359 Species:Mus musculus


Alignment Length:141 Identity:59/141 - (41%)
Similarity:86/141 - (60%) Gaps:8/141 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 YAIIHHTAGSYCETRAQCNAVLQSVQNYHMDSLGWPDIGYNFLIGGDGNVYEGRGWNNMGAHAAE 111
            :.||.||||..|...|.|...::..|::|:|:..:.||.|:||:|.||.||||.|||..|:|...
Mouse   221 FVIIIHTAGKSCNESADCLVRVRDTQSFHIDNQDFCDIAYHFLVGQDGEVYEGVGWNIEGSHTYG 285

  Fly   112 WNPYSIGISFLGNYNWDTLE--PN--MISAAQQLLNDAVNRGQLSSGYILYGHRQVSATECPGTH 172
            :|..::||:|:||:    :|  ||  .:.|||.|:..||.:|.|:|.|:|.||..||....||..
Mouse   286 YNDIALGIAFMGNF----VEKPPNEASLKAAQSLIQCAVAKGYLTSNYLLMGHSDVSNILSPGQA 346

  Fly   173 IWNEIRGWSHW 183
            ::|.|:.|.|:
Mouse   347 LYNIIKTWPHF 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-SC1aNP_610407.1 PGRP 22..163 CDD:128941 51/119 (43%)
Pglyrp3XP_006501534.1 PGRP 40..172 CDD:128941
PGRP 197..337 CDD:128941 51/119 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167842406
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm44042
orthoMCL 1 0.900 - - OOG6_101717
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1649
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
65.700

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