DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-SC1a and mig-39

DIOPT Version :9

Sequence 1:NP_610407.1 Gene:PGRP-SC1a / 35859 FlyBaseID:FBgn0043576 Length:185 Species:Drosophila melanogaster
Sequence 2:NP_498871.3 Gene:mig-39 / 185686 WormBaseID:WBGene00018369 Length:943 Species:Caenorhabditis elegans


Alignment Length:145 Identity:28/145 - (19%)
Similarity:55/145 - (37%) Gaps:33/145 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 QYMAQGVYVVSKAEWGGRGAKWTVGLGN-------YLSYAIIHHTAGSYCETRAQCNAVLQSVQN 73
            |...:|:.::|:.||..     ..|:.:       :::|:....|..:...|..|...||:. ..
 Worm   651 QMNMEGITLISEREWNK-----VTGIHHLMNIFKPFMTYSTDMTTVDTVIPTIVQIQNVLEK-DI 709

  Fly    74 YHMDSLGWPDIGYNFLIGGDGNVY-----EGRGWNNMGAHAAEWNPYSIGISFLGNYNWDTLEPN 133
            ||:.     |||.:.|......|.     |...:::....|...|| .:.:         ||..:
 Worm   710 YHLG-----DIGSDLLTSLKQTVAPIMNPEHENFDSTYIQATALNP-QLAV---------TLTSD 759

  Fly   134 MISAAQQLLNDAVNR 148
            .::.|:.|:...::|
 Worm   760 QMTTAKSLIETEISR 774

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-SC1aNP_610407.1 PGRP 22..163 CDD:128941 26/139 (19%)
mig-39NP_498871.3 Dimer_Tnp_hAT <866..>902 CDD:283379
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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