DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12376 and ncx-4

DIOPT Version :9

Sequence 1:NP_610405.3 Gene:CG12376 / 35857 FlyBaseID:FBgn0033323 Length:617 Species:Drosophila melanogaster
Sequence 2:NP_001040663.1 Gene:ncx-4 / 172834 WormBaseID:WBGene00003569 Length:596 Species:Caenorhabditis elegans


Alignment Length:587 Identity:126/587 - (21%)
Similarity:242/587 - (41%) Gaps:113/587 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 CNRSTNVLPYMRIMACDLNCVNEF---------EQVIFLALFM-GLCYEILVLLIHVCNKYYSPA 100
            ||||      :...|.|:|...:|         .|..|:.|.| ||.|..:.|.| ||::::.|:
 Worm    70 CNRS------LAPPAPDVNDDGQFPPDPFSLEQRQNGFVVLHMCGLIYMFVSLAI-VCDEFFVPS 127

  Fly   101 LKAVSRFLCMNEHVAGVTLLAFGNSSADLFSNLASVNANVPVFANSLAAALFVSMVSGGLICY-- 163
            |..::..|.:::.|||.|.:|.|.|:.:.|:::..|.    :..|::.....|...:..::|.  
 Worm   128 LDVLTEKLSLSDDVAGATFMAAGGSAPEFFTSVIGVF----IAQNNVGIGTIVGSATFNILCVLA 188

  Fly   164 ------TSPFKMNAYESVRDI-LFLIFGSMLLQYFLASSAHVPETSFIVMFLVYIFYILVNVVDV 221
                  .|...:..:...||: ::::..:||:.:|:......||.  :.||.:||.|..|     
 Worm   189 FCTLFSKSILDLTWWPLFRDVSIYMLALAMLVFFFMDEMITFPEA--LAMFSIYIVYCTV----- 246

  Fly   222 YLIRRALKTTNAQIDALLVGEMTPEKRKRLSELERNQAIYTRDMEVEIFERTNSGPNINKIRYTT 286
                   ...|.|::.|:         |:.|:.|...|..|:.:..:: ...|:..::.::..:.
 Worm   247 -------MKFNGQLEQLV---------KKGSDSEEASAHETQKLAADV-PHNNNNNDLAQLEGSE 294

  Fly   287 LRMGRSTRISLDRKATRMVLHNRALGRNWGLFKDLFIALRPINCEKWRKGNIIKRAFMLTKIPAV 351
            ||     |.|..|:.:..:||:..:.|| |:.:.:...|..:..:.....:...|:         
 Worm   295 LR-----RRSSARRQSVPILHSGTMFRN-GIMQLMNQTLEQLPEDSEEDDSSRSRS--------- 344

  Fly   352 IICCIYIPLVDYELDKHGWNKLLNCIQVMLNPAMS-IMAIKALLSSRG----NSLWYVAMGEEAI 411
                      :..::.|..:: ||..|.|.:...| |..||:||..:.    :..|.....:...
 Worm   345 ----------NVNIESHDMHR-LNVNQSMPDRRSSQIEEIKSLLEEQEEKPLDMTWPETWVKRLT 398

  Fly   412 YAMYSLPITVPIAVFMFIQSRTDVPPFYHSVFTVMNLTGSMF---MIFICATEIDKVLEVIGHIL 473
            |.:.: |:.:|:.|.:....::.....|.:.|.:..|..:.|   |::...|        ||...
 Worm   399 YVLLA-PVVIPMWVTIPDVRKSHNRGLYPATFIISILWIAFFSYLMVWWANT--------IGETF 454

  Fly   474 KVEDDFMGATVKACTGSLGPLIANVAMALHGYPRMAYASAIGGPFFTVVMSAS-------TVMHV 531
            .:..:.:|.|:.|...|:..||.:|.:|..|...||.:|::|...|.|.:...       .:.::
 Worm   455 VIPTEIIGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDVCVGLPIPWLLYFLIEYI 519

  Fly   532 KN----LFGLPVSEANQTGNYGLNAFIFLNLGVFSTLLWSTTLGFFARRSVGIFSIVFYCIYLLF 592
            |:    |..:.||......:.|: .||.|.:.||:..|    .|:...:..||..||.|..:.:|
 Worm   520 KHPNEPLSPISVSSKGLLCSVGM-LFIMLIVLVFAIFL----SGWKMNKIFGILMIVSYVFFCVF 579

  Fly   593 AI 594
            ::
 Worm   580 SV 581

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12376NP_610405.3 PLN03151 33..592 CDD:215604 125/583 (21%)
Na_Ca_ex 85..219 CDD:279963 33/142 (23%)
Na_Ca_ex 448..595 CDD:279963 39/161 (24%)
ncx-4NP_001040663.1 2A1904 <48..594 CDD:273344 126/587 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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