DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ptc and disp

DIOPT Version :9

Sequence 1:NP_523661.2 Gene:ptc / 35851 FlyBaseID:FBgn0003892 Length:1286 Species:Drosophila melanogaster
Sequence 2:NP_524734.2 Gene:disp / 44274 FlyBaseID:FBgn0029088 Length:1218 Species:Drosophila melanogaster


Alignment Length:1304 Identity:247/1304 - (18%)
Similarity:449/1304 - (34%) Gaps:407/1304 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 KSAQIHSKVHQLWIQEGGRLEAELAYTQKTIGED----ESATHQLLIQTTHDPNASVLHPQALLA 153
            :|:..|..|.|..:|...||:| .:.....:|.|    :|...: ..:.|:|..:|.|.|.....
  Fly   128 QSSHEHHDVAQKMMQFKKRLKA-TSSPSPNLGFDTWIGDSGVFR-DYEITNDSASSSLEPTRRTE 190

  Fly   154 HLEVLVKATAV-------KVHLYDTEWGLRDMCNMPSTPSFEGIYYIEQILRHLIPCSIITPLDC 211
            .:|.....|:|       :|....:.|.|........|..:..::..:             |::.
  Fly   191 QIEYGHNTTSVDEEEHQQRVQTKKSTWRLLKQAATLPTDGWADMHRRQ-------------PIEG 242

  Fly   212 FWEGS-----------QLLGPESAVVIPGLNQRLLWTTLNPASVMQYMKQKMSEEKISFDFETVE 265
            |:..|           |.:||.:...:..||..|         .|..::.:::|         |.
  Fly   243 FFCDSSPRKEYSHFVVQRIGPNATDSLFDLNGLL---------AMCQLQDQITE---------VP 289

  Fly   266 QYMKRAAIGSGYMEKPCLNPLN-PNCPDTAPNKNS---TQPPDVGAI--LSGGCYGY-------- 316
            .|  ||......:...|..|.: ||......||:|   ....||.::  |..|||.|        
  Fly   290 SY--RAFCEPEMLTTECCRPWSLPNYAAMLANKSSCFDLTTEDVTSLHTLLLGCYEYFHDLKMDN 352

  Fly   317 ---AAKHMHWPEEL----IVGGA----------KRNRSG-HLRKAQALQSVVQLMTEKEMYDQWQ 363
               ...|...|||.    ||...          |.|.|. :|:.|.....|.|......::.:|:
  Fly   353 HCNEIPHCRAPEECKRLNIVFNVLNFLTDFSFIKSNDSNVYLKYAMIFIPVAQSNRLLPLFHEWE 417

  Fly   364 DNYKVHHLGWTQEKAAEVLNAWQRNFSREV--EQLLRKQSRIATNYDIYVFSSAALDDILAKFSH 426
            |...::.|       .||: |.......|:  |.||.         |:::.|             
  Fly   418 DVELINEL-------VEVV-AMDLGLENELFNELLLT---------DVWLVS------------- 452

  Fly   427 PSALSIVIGVAVTVLY---AFCTLLRWRDPVRGQSSVGVAGVLLMCFSTAAGLGL-----SALLG 483
               |.....:|...||   ||.||:         |.|.:      |||    |||     :.:|.
  Fly   453 ---LGGTFVMASVWLYTGSAFITLM---------SCVAI------CFS----LGLAYFFYAIVLE 495

  Fly   484 IVFNAASTQVVPFLALGLGVDHIFM--------LTAAYAESNRREQT------------------ 522
            ..|......:...:.:|:|.|.:|:        ||..:  |||...|                  
  Fly   496 FEFFPYMNLLAVVVIIGIGADDVFLFLKIWHCVLTERF--SNRCTLTTQSQSALPTLENSDHTES 558

  Fly   523 -----KLILKKVGPSILFSACSTAGSFFAAAFIPVPALKVFCLQAAIVMCSNLAAALLVFPAMIS 582
                 .|.::....|:..::.:|||:|:|:....:.|:|.|.:.|..|:.:|....:...||.:|
  Fly   559 LENIMALTMRHAAASMFVTSLTTAGAFYASYSSSITAIKCFGIFAGTVVVTNYLLMITWLPASVS 623

  Fly   583 LDLRRRTAGRADIFCCCFPVWKEQPKVAPPVLPLNNNNGRGARHPKSCNNNRVPLPAQNPLLEQR 647
            : :.|..|.|                             ....||.|     :.|          
  Fly   624 I-MERLFATR-----------------------------MSCHHPMS-----IKL---------- 643

  Fly   648 ADIPGSSHSLASF----------SLATFAFQHYTPFLMRSWVKFLTVMGFLAALISSLYASTRLQ 702
              |.....|:..|          |:..:|:         .|:.....:|..:|:|...|...:| 
  Fly   644 --IHACKKSINRFCQMFEECITKSIMNYAY---------LWLLIFGALGASSAVIVFWYPGLQL- 696

  Fly   703 DGLDIIDLVPKDSNEHKFLDAQTRLFGFYSMYAVTQGNFEYPTQQQLLRDYHDSFVRVPHVIKND 767
                     |:.|:...|:....  |..||... .|..||.|.|.      :::|....|.:   
  Fly   697 ---------PEKSHFQLFVSKHP--FEVYSSLK-QQFWFEKPLQA------YENFKMHMHFV--- 740

  Fly   768 NGGLPDFWLLLFSEWLGNLQKIFDEEYRD----GRLTKECWFPNASSDA---ILAYKLIVQTGHV 825
                          |  .:|.:.|.:|.:    |.|..:..|..:|..|   ||.:...|:    
  Fly   741 --------------W--GVQAVDDGDYTNPNSYGHLHYDNNFNVSSRPAQLWILDFCQSVR---- 785

  Fly   826 DNPVDKE---LVLTNRLVNSDGIINQRAFYNYLSAWATNDVFAYGASQGKLYPEPRQYFHQPNEY 887
            ..|..||   ::|.|..:.:        ..:|:.....:|:.:....:....  ..|:..:|:.:
  Fly   786 QQPFYKETLGMLLPNCFIEN--------LIDYMKRRCIDDMDSTRKDRSPCC--DAQFPFEPHIF 840

  Fly   888 DLKIPKSLPLVYAQMPFYLHGL-----TDTSQIKT--LIGHIRDLSVKYEGFG----------LP 935
            :..:|:|:..:| ...|:..|:     .:..:::|  .:|...:.|.:|...|          :.
  Fly   841 EYCLPQSISNMY-DTTFFRPGVAGPKFAEAPRLETEDYLGMSGNESAEYSTNGSFTPLLVKALVI 904

  Fly   936 NYPSGIPFI--------FWE--------------------------QYMTLRSSLA---MILACV 963
            .:.|.:.:.        |:|                          ::..::.:|:   .:..|:
  Fly   905 EFESNVAYSTIYANIRQFYESVEHWFQMQLKTAPPELQGGWFTSDLKFYNVQDTLSHDTFVAICL 969

  Fly   964 LLAALVLVSL-----LLLSVWAAVLVILSVLASLAQIFGAMTLLGIKLSAIPAVILILSVGMMLC 1023
            .:||.:.|.|     :|:|::|.:.|.||:..::|    .:.|||.:|:.:.::.:..::|:.:.
  Fly   970 AMAASLAVLLCFTVNILISIYAVLTVSLSIFNTVA----VLILLGWQLNILESIAVSTAIGLAVD 1030

  Fly  1024 FNVLISLGF-MTSVGNRQRRVQLSMQMSLGPLVHGMLTSGVA-VFMLSTSPFEFV-IRHFCWLLL 1085
            |::...:.: |:.|..|....|..:...:||.|....|:|:| ..|::::...:: |..|   |:
  Fly  1031 FSLHYGIHYRMSPVKERLAATQFVLSRIIGPTVMAATTTGLAGGIMMASNILPYIQIGVF---LV 1092

  Fly  1086 VVLCVGACNSLLVFPILLSMVGPEAELVPLEHPDRISTPSPLPVRSSKRSGKSY----------- 1139
            ||:.|....:......||.:.||:...:.|:.        ||..:.|..|.|.|           
  Fly  1093 VVMIVSWFYATFFLMSLLRVAGPQHGFLELKW--------PLWSKRSSGSSKFYERKPSQVIASE 1149

  Fly  1140 -VVQGSRSSRGSCQKSHHHHHKDLNDPSL-TTITEEPQSWKSSNSSIQMPNDWTYQPREQRPASY 1202
             ::..:.|:......|..|..:.||..|| .||:    ..:|:::...:|.|:.:..:......|
  Fly  1150 QLLTPTSSAIVELANSETHELESLNSNSLIKTIS----GIESAHALSSLPRDFEHSFQTMHECKY 1210

  Fly  1203 AAPP 1206
            ...|
  Fly  1211 QTYP 1214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ptcNP_523661.2 2A060602 17..1134 CDD:273338 230/1217 (19%)
MMPL 454..598 CDD:304422 39/179 (22%)
dispNP_524734.2 Patched <444..1111 CDD:280598 150/828 (18%)
MMPL 457..627 CDD:304422 43/191 (23%)
TM_PBP1_branched-chain-AA_like 964..>1109 CDD:294309 35/151 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45460574
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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