DRSC/TRiP Functional Genomics Resources

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Protein Alignment ptc and ptch2

DIOPT Version :9

Sequence 1:NP_523661.2 Gene:ptc / 35851 FlyBaseID:FBgn0003892 Length:1286 Species:Drosophila melanogaster
Sequence 2:NP_571063.2 Gene:ptch2 / 30181 ZFINID:ZDB-GENE-980526-44 Length:1442 Species:Danio rerio


Alignment Length:1422 Identity:483/1422 - (33%)
Similarity:756/1422 - (53%) Gaps:205/1422 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PRVPDTHGDVVDE----------KLFSDLYIRTSWVDAQVALDQIDKGKARGSRTAIYLRSVFQS 61
            ||.|...|.|..:          .:.|||..|.|:..|..||.||.||||.|.:..:::|:.||:
Zfish     5 PRDPGPAGGVFGDLPPSYTRSPPPVNSDLLRRPSYCHAAFALKQISKGKAVGQKAPLWIRARFQA 69

  Fly    62 HLETLGSSVQKHAGKVLFVAILVLSTFCVGLKSAQIHSKVHQLWIQEGGRLEAELAYTQKTIGED 126
            .|.:||..:|:|.|||||:.:||.....|||:.|.|.:.:.:||::.|.|:..||.||::..||:
Zfish    70 FLFSLGCHIQRHCGKVLFIGLLVFGALSVGLRVAAIETDIEKLWVEAGSRVSKELRYTKEKQGEE 134

  Fly   127 ESATHQLLIQTTHDPNASVLHPQALLAHLEVLVKATAVKVHLYDTEWGLRDMCNMPSTPSFEGIY 191
            ...|.|:||||......::|..:|||.|||..:.|:.|:|.||...|.|..:|.....|..|.: 
Zfish   135 SVFTSQMLIQTPKQEGTNILTQEALLLHLEAALSASKVQVSLYGKSWDLNKICFKSGVPIIENV- 198

  Fly   192 YIEQILRHLIPCSIITPLDCFWEGSQLLGPESAVVIPGLNQRLLWTTLNPASVMQYMKQKMSEEK 256
            .||:::..|.||.|:||||||||||:|.|  .:..:||:.. :.|..|:|..:|:.:.|..|   
Zfish   199 MIERMIDKLFPCMIVTPLDCFWEGSKLQG--GSAYLPGMPD-IQWMNLDPLKLMEELSQFTS--- 257

  Fly   257 ISFDFETVEQYMKRAAIGSGYMEKPCLNPLNPNCPDTAPNKNSTQPPDVGAILSGGCYGYAAKHM 321
                .|...:.:.:|.:|..||.:|||:|.:.:||.:||||:..|.|::.|.|.|||:|::.|.|
Zfish   258 ----LEGFREMLDKAQVGHAYMNRPCLDPSDTDCPHSAPNKDPWQVPNIAAELQGGCHGFSKKFM 318

  Fly   322 HWPEELIVGGAKRNRSGHLRKAQALQSVVQLMTEKEMYDQWQDNYKVHHLGWTQEKAAEVLNAWQ 386
            ||.||||:|...::....|:.|:|||::..||:.|::|:.::|:|::|.:.|.::||..:|.:||
Zfish   319 HWQEELILGERVKDSQNALQSAEALQTMFLLMSPKQLYEHFKDDYEIHDINWNEDKATAILESWQ 383

  Fly   387 RNFSREVEQLLRKQSRIATNYDIYVFSSAALDDILAKFSHPSALSIVIGVAVTVLYAFCTLLRWR 451
            |.|...|...:.:.|    :.::|.||:..|:||:..||..|.:.:..|..:.:.||..|:||| 
Zfish   384 RKFVEVVHGSIPQNS----SSNVYAFSTTTLNDIMKSFSDVSVIRVAGGYLLMLAYACVTMLRW- 443

  Fly   452 DPVRGQSSVGVAGVLLMCFSTAAGLGLSALLGIVFNAASTQVVPFLALGLGVDHIFMLTAAYAES 516
            |..:.|.:||:|||||:..|.||||||.:|||:.||||:|||:||||||:|||.:|:|..::.|:
Zfish   444 DCAKSQGAVGLAGVLLVALSVAAGLGLCSLLGLSFNAATTQVLPFLALGIGVDDMFLLAHSFTET 508

  Fly   517 NR----REQTKLILKKVGPSILFSACSTAGSFFAAAFIPVPALKVFCLQAAIVMCSNLAAALLVF 577
            ..    :|:|...|::.|.|:..::.:...:||.||.:|:|||:.|.||||:|:..|.|..||:|
Zfish   509 RSNIPFKERTGDCLRRTGTSVALTSINNMIAFFMAALVPIPALRAFSLQAAVVVVFNFAMVLLIF 573

  Fly   578 PAMISLDLRRRTAGRADIFCCCF-PVWKEQPKVAPPVL-PLNNNNGRGARHPKSCNNN------- 633
            ||::||||.||...|.||.||.: |......::.|..| ..|:|:.|....|....:.       
Zfish   574 PAILSLDLHRREDKRLDILCCFYSPCSSRVIQIQPQELSDANDNHQRAPATPTYTGSTITTSTHI 638

  Fly   634 ------------------------------------RVPLPAQNPLLEQRADIPGSSHSLAS--- 659
                                                ..|.|..:|...|......|:..|.:   
Zfish   639 TTTVQAFTQCDAAGQHIVTILPPTSQISTTPPSMVLSTPTPTTDPYGSQVFTTSSSTRDLLAQVE 703

  Fly   660 ---------------FSLATFAFQHYTPFLMRSWVKFLTVMGFLAALISSLYASTRLQDGLDIID 709
                           ::|::||.:.|.|.|::...|.:.|:.|:|.|..|||.:|.:.|||.:.|
Zfish   704 EPKEGRECVPLPFFRWNLSSFAREKYAPLLLKPETKTVVVVVFVALLSLSLYGTTMVHDGLYLTD 768

  Fly   710 LVPKDSNEHKFLDAQTRLFGFYSMYAVTQGNFEYPTQQQLLRDYHDSFVRVPHVIKNDNGGLPDF 774
            :||:|:.|::|:.||.:.|.||:||.||...|:|...|:.|...|::|..|.:|:|:.|..||..
Zfish   769 IVPRDTQEYEFITAQFKYFSFYNMYLVTMDGFDYARSQRQLLQLHNAFNSVKYVVKDGNHKLPRM 833

  Fly   775 WLLLFSEWLGNLQKIFDEEYRDGRLTKECWFPNASSDAILAYKLIVQTGHVDNPVDKELVLTNRL 839
            ||..|.:||..||..||.::..|::|.:. :.|.:.|..|||||::|||....|.:...:.:.||
Zfish   834 WLHYFQDWLKGLQATFDADWEAGKITYDS-YRNGTEDGALAYKLLIQTGSKKEPFNYSQLTSRRL 897

  Fly   840 VNSDGIINQRAFYNYLSAWATNDVFAYGASQGKLYPEPRQYFHQPNEYD-----LKIPKSLPLVY 899
            |:.||:|....||.||:.|.:||...|.|||...||.||::.|  ::||     |:||.:.||.:
Zfish   898 VDEDGLIPPEVFYIYLTVWVSNDPLGYAASQANFYPHPREWIH--DKYDTTGENLRIPAAEPLEF 960

  Fly   900 AQMPFYLHGLTDTSQIKTLIGHIRDLSVKYEGFGLPNYPSGIPFIFWEQYMTLRS----SLAMIL 960
            ||.||||:||...|.....|..:|.:..::...|:.|||:|.||:|||||:.||.    |::::|
Zfish   961 AQFPFYLNGLRQASDFIEAIESVRTICEEFMRQGIKNYPNGYPFLFWEQYIGLRHWFLLSISVVL 1025

  Fly   961 ACVLLAALVLVSLLLLSVWAAVLVILSVLASLAQIFGAMTLLGIKLSAIPAVILILSVGMMLCFN 1025
            ||..|    :.::|||:.|.|.:::..:.....::||.|.|:||||||||.||||.|||:.:.|.
Zfish  1026 ACTFL----VCAILLLNPWTAGVIVFILAMMTVELFGIMGLIGIKLSAIPVVILIASVGIGVEFT 1086

  Fly  1026 VLISLGFMTSVGNRQRRVQLSMQMSLGPLVHGMLTSGVAVFMLSTSPFEFVIRHFCWLLLVVLCV 1090
            |.|:|||:|::|:|..|..::|:....|::.|.:::.:.|.||:.|.|:|::|:|..:|.::..:
Zfish  1087 VHIALGFLTAIGDRNTRSAVAMEHMFAPVIDGAISTLLGVLMLAGSEFDFIMRYFFAVLAILTLL 1151

  Fly  1091 GACNSLLVFPILLSMVGPEAELVPLEHPDRISTPSPLPV--------------------RSSKRS 1135
            |..|.|::.|:|||::||.||:||..:.:.:.:|||.|:                    ..|:.|
Zfish  1152 GILNGLVLLPVLLSLMGPPAEVVPANNANHLQSPSPEPMPPPMNHHGYYAGHIPKASHQAFSETS 1216

  Fly  1136 GKSYVVQGSRSSR-GS-----CQKSHH--------------HHHKDLNDPSLT------------ 1168
            ...|..:.:.:|. |.     |.:|.:              ...|:.:.|.||            
Zfish  1217 DSEYYSETTTTSGIGEEEYKYCDRSTYITPPAQPPTTHILLEASKNPSFPKLTVVKPFHEVQNCE 1281

  Fly  1169 -------TITEEPQSWKSSNSS-----IQMPNDWTYQPREQRPASYAAPPPAYHKAAAQQHHQHQ 1221
                   :|:.:.:.|.:.|..     ..:|.|.|   ..||..:...|.|  .:...||.::  
Zfish  1282 TKQNAVNSISSQIKRWDNKNEDQGQRRQHLPTDRT---NCQRRTTQCGPGP--QQGTGQQQNR-- 1339

  Fly  1222 GPPTTPPPPFPTAYPPELQSIVVQPEVTVETTHSDSNTTKVTATANIKVEL--AMPG 1276
                      .||:...||             |.::..|.|||||::.|.:  ::||
Zfish  1340 ----------TTAHTGALQ-------------HPNNAITMVTATASVTVAVHPSLPG 1373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ptcNP_523661.2 2A060602 17..1134 CDD:273338 442/1222 (36%)
MMPL 454..598 CDD:304422 72/147 (49%)
ptch2NP_571063.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..27 5/21 (24%)
2A060602 31..1182 CDD:273338 437/1173 (37%)
Sterol-sensing 445..595 CDD:289145 73/149 (49%)
SLC5-6-like_sbd <1004..>1151 CDD:294310 59/150 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170589954
Domainoid 1 1.000 284 1.000 Domainoid score I1595
eggNOG 1 0.900 - - E1_KOG1935
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 841 1.000 Inparanoid score I425
OMA 1 1.010 - - QHG49297
OrthoDB 1 1.010 - - D1190129at2759
OrthoFinder 1 1.000 - - FOG0003078
OrthoInspector 1 1.000 - - otm25600
orthoMCL 1 0.900 - - OOG6_105508
Panther 1 1.100 - - O PTHR46022
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2737
SonicParanoid 1 1.000 - - X2446
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 1 1.500 - -
1616.390

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