DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ptc and Disp1

DIOPT Version :9

Sequence 1:NP_523661.2 Gene:ptc / 35851 FlyBaseID:FBgn0003892 Length:1286 Species:Drosophila melanogaster
Sequence 2:XP_038946501.1 Gene:Disp1 / 289338 RGDID:1307675 Length:1556 Species:Rattus norvegicus


Alignment Length:1336 Identity:244/1336 - (18%)
Similarity:435/1336 - (32%) Gaps:446/1336 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 DTEWGL---RDMCNMP-----STPSFEGIYYIEQILRHLIPCSIITPLDCFWEGSQLLGPESAVV 226
            :|.|.|   :.||::.     |.|.|..:            |...|.:.|               
  Rat   343 ETLWNLPAIKSMCDVDNSRIRSHPQFSDL------------CQRTTAVSC--------------- 380

  Fly   227 IPGLNQRLLWTTLNPASVMQYMK--QKMSEEKISFDFETVEQYMKRAAIGSGYMEKPCLNPLNPN 289
            .|.      ||..|..:::....  ||:.|..:|...:.:....|....|:          |.|:
  Rat   381 CPS------WTLGNYIAILNNRSSCQKIVERDVSHTLKLLRTCAKHYQNGT----------LGPD 429

  Fly   290 CPDTAPNKNSTQPPDVGAILSGGCYGYAAKHMHWPEELIVGGAKRNRSGHLRKAQALQSVVQLMT 354
            |.|.|..:.                          ::|......|.    ..|..|:..::..:.
  Rat   430 CWDKAARRK--------------------------DQLKCTNVPRK----CTKYNAVYQILHYLV 464

  Fly   355 EKEMYDQWQDNYKVHHLGWTQ-----EKAAEVLNAWQRNFSREVEQLLRKQSRI--ATNYDIYVF 412
            :|:.......:|.|..|.::.     ||...::|.:..||..     ......|  .|..:..:.
  Rat   465 DKDFMTSKTADYAVPALKYSMLFSPTEKGESMMNIYLDNFEN-----WNSSDGITTVTGIEFGIK 524

  Fly   413 SSAALDDILAKFSHPSALSIVIGVAVTVLYAFCTLLRWRDPVRGQSSVGVAGVLLMCFSTAAGLG 477
            .|...|.:|....:| |::|.|.:.:..:|.              .||.:  .|:..|:..:.|.
  Rat   525 HSLFQDYLLMDTVYP-AIAIAIVLLIMCVYT--------------KSVFI--TLMTMFAIISSLI 572

  Fly   478 LSALL-GIVFNAASTQVVPFLAL-------GLGVDHIFMLTAA--YAESNR-----REQTKLILK 527
            :|..| .:|||   .:..||:.|       |:|.|..|:|...  |.:|::     .|...:.|:
  Rat   573 VSYFLYRVVFN---FEFFPFMNLTALIILVGIGADDAFVLCDVWNYTKSDKPRAETSEAVSVTLQ 634

  Fly   528 KVGPSILFSACSTAGSFFAAAFIPVPALKVFCLQAAIVMCSNLAAALLVFPAMISLDLRRRTAGR 592
            ....|:..::.:||.:|:|.....:.|::.|.:.|...:..|....:...||:|.|..|.    .
  Rat   635 HAALSMFVTSFTTAAAFYANYVSNITAIRCFGVYAGTAILVNYVLMVTWLPAVIVLHERY----L 695

  Fly   593 ADIFCCCFPVWKEQPKVAPPVLPLNNNNGRGARHPKSCNNNRVPLPAQNPLLEQRADIPGSSHSL 657
            .:||.|   ..|.||:               |.| |||..          :|.::    |.....
  Rat   696 LNIFTC---FRKPQPQ---------------AYH-KSCWT----------VLCRK----GRKALF 727

  Fly   658 ASFSLATFAFQHYTPFLMRSWVKFLTVMGFLAALISSLYASTRLQDGLDIIDLVPK------DSN 716
            |....:...|:...|.::..: ::|.::.|||..:...|          |:.:.||      :.:
  Rat   728 AISEASRIFFEKVLPCIVIKF-RYLWLVWFLALTVGGAY----------IVCINPKMKLPSLELS 781

  Fly   717 EHKFLDAQTRLFGFYSMYAVTQGNFEYPTQQQLLRDYHDSFVRVPHV----IKNDNGGLP----- 772
            |.:.         |.|.:...:.:.|:.......|.:|...:.:|..    :..::.|.|     
  Rat   782 EFQV---------FRSSHPFERYDAEFKKLFMFERVHHGEELHMPITVIWGVSPEDSGDPLNPKS 837

  Fly   773 -----------------DFWLLLFSEWLGNLQKIFDEEYRDGRL----TKECWFPNASSDAILAY 816
                             ..|:|.|.:.|.|.......|.:|...    |.:.|..|...|....|
  Rat   838 KGELTLDSTFNIASPASQAWILHFCQKLRNQTFFHQTEQQDFTSCFIETFKQWMENQDCDEPALY 902

  Fly   817 KLIVQTGHVDNPVDK---ELVLTNRLVNSDGIINQRAFYNYLSAWATNDVFAYGASQGKLYPEPR 878
            ..   ..|...|..:   ||.:...::..|.                    :.|.......|.||
  Rat   903 PC---CSHCSFPYKQEVFELCIKKAIMELDR--------------------STGYHLNNKTPGPR 944

  Fly   879 QYFHQPNEYD---------LKIPKS--LPLVYAQM-PFYLHGLTDTSQIKTLIGHIRDLSVKYEG 931
                    :|         |:...:  ..|.|.:| .||       .::.:.|.|  :||...||
  Rat   945 --------FDINDTIRAVVLEFQSTFLFTLAYEKMQQFY-------KEVDSWISH--ELSSAPEG 992

  Fly   932 FGLPNYPSGIPFIFWEQYMTLRSSLAMILACVLLAALVLVSL--LLLSVWAAVLVILSVLASLAQ 994
            .....:.|.:.|...:..::..:.:||.|:..:..:::|::.  :::|::|    |.|:..::..
  Rat   993 LSHGWFVSNLEFYDLQDSLSDGTLIAMGLSVAVAFSVMLLTTCNIIISLYA----IASIAGTIFV 1053

  Fly   995 IFGAMTLLGIKLSAIPAVILILSVGMMLCFNVLISLGF-MTSVGNRQRRVQLSMQMSLGPLVHGM 1058
            ..|::.|||.:|:.:.:|.:.::||:.:.|.|...:.: :....:|:.:|..|:         |.
  Rat  1054 TVGSLVLLGWELNVLESVTISVAVGLSVDFAVHYGVAYRLAPDPDREGKVIFSL---------GR 1109

  Fly  1059 LTSGVAVFMLSTSPFEFV---------IRHFCWL---LLVVLCVGACNSLLVFPILLSMVGPEAE 1111
            :.|.:||..|:|    ||         :..:..|   :::|:||....:...|..|...:||:..
  Rat  1110 MGSAIAVAALTT----FVAGAMMMPSTVLAYTQLGTFMMLVMCVSWAFATFFFQCLCRCLGPQGT 1170

  Fly  1112 LVPLEHPDRISTPSPLPVRSSKRSGKS-----------------------YVVQ--GSRSSRGS- 1150
            ...:..|.::...:.....:::..|::                       |.:|  ||.|...| 
  Rat  1171 CGQIPLPKKLQCSAFSHTSAARPGGRAPGKATNAYSVDARGQKSELEHELYELQPLGSHSCTSSD 1235

  Fly  1151 ---------CQKSHHHHHKDLNDPS----LTTITEEPQSWKSS-----------------NSSIQ 1185
                     |.:..:...|:|..|.    .:.:|:.|:|...|                 |....
  Rat  1236 MTAYEGPCICSEFFNGQAKNLRMPMSAAYSSELTKSPRSEPGSALLQPCLEQDTMCHFSLNPRCN 1300

  Fly  1186 MPNDWTYQ----PR---EQRPASY-----------------AAPPPAYHKAA------------- 1213
            .||.:|::    |.   :|...|.                 |||..|.|.||             
  Rat  1301 CPNAYTHRKYGLPEIHCQQMGDSLCHKCASTAGSFVQIQNAAAPLKATHHAAEGLLHPVQHMLPP 1365

  Fly  1214 -------------AQQHHQHQ---GPPTT---------------PPPPFPTAYPPELQSIVVQPE 1247
                         ..||.|.|   ||.:|               |||...:......|.....||
  Rat  1366 GMQNSQSRNFFLHPVQHFQAQESLGPTSTRGRENTDERPPRTAEPPPAGASRSSESFQRACCNPE 1430

  Fly  1248 ----------VTVETTHSDSNTTKVTATAN--IKVE 1271
                      .:.:|..|....|||...||  .|||
  Rat  1431 NNQRRLCKSRDSGDTEGSGGTETKVCGLANQTDKVE 1466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ptcNP_523661.2 2A060602 17..1134 CDD:273338 192/1061 (18%)
MMPL 454..598 CDD:304422 38/158 (24%)
Disp1XP_038946501.1 Patched 467..1147 CDD:355433 153/818 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166348807
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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