DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cirl and Adgre4

DIOPT Version :9

Sequence 1:NP_001260807.1 Gene:Cirl / 35846 FlyBaseID:FBgn0033313 Length:1711 Species:Drosophila melanogaster
Sequence 2:NP_001007559.1 Gene:Adgre4 / 450235 RGDID:1359641 Length:683 Species:Rattus norvegicus


Alignment Length:713 Identity:157/713 - (22%)
Similarity:286/713 - (40%) Gaps:132/713 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   383 ISSTTPAPSGGDCLHNSSSCEPPVSM-AHKVNQRLRNFEPTWHPATPDLTQCRSLWLNNLEMRVN 446
            ||::.|..:......||:.|...... ....|:|:  .||  |....|:.:||      ||.   
  Rat    32 ISASCPQCNENAICFNSTHCICKEGFWTGSENRRI--IEP--HVKCQDIDECR------LEE--- 83

  Fly   447 QRDSSLISIANDMSEVTSSKTLYGGDMLVTTKIIQTVSEKMMHDKETFPDQRQREAMIMELLH-- 509
                   ::..|:|...:....|....:|...||..|                  |.|.::.|  
  Rat    84 -------TLCKDVSYCRNKIGTYICSCVVKYPIINWV------------------AAIFDIDHPD 123

  Fly   510 CVVKTGSNLLDESQLSSWL--DLN-PEDQMRVATSLLTGLEYNAFLLADTIIRERS---VVQKVK 568
            |.|...:.:..::..:|.:  |.| .||..:.||..|...|.:       |:.|.|   :....:
  Rat   124 CYVNKSNEIGSKAACTSGVLYDCNSKEDVAKGATVYLQNTERH-------ILNENSDTPIKSSTR 181

  Fly   569 NILLSVRVLETKTIQSSVVFPDSDQWPLSSDRIELPRAALIDNSEGGLVRIVFAAFDRLESILKP 633
            :|     |.||...:.:.:....:    ::.:|.. .:.|.:|.......:.|.|:..|.::|..
  Rat   182 DI-----VYETNKCKKTTILEAGN----NTMKINC-TSVLKENKNRDETTVAFIAYKSLGNLLNG 236

  Fly   634 SYDHFDLKSSRSYVRNTAILSNDSDVNAGEIQQRLRILNSKVISASLGKGRHIQLSQPITLTLKH 698
            |:  |..|.....|:                      |||.::|.::.......||:|:.|||::
  Rat   237 SF--FRNKEGFQEVK----------------------LNSHIVSGAIRSEIKPVLSEPVILTLQN 277

  Fly   699 LK-TENVTNPTCVFWNYIDH--AWSANGCSLESTNRTHSVCSCNHLTNFAILMDVVDEHQHSLFT 760
            .: .::.....||:|...:.  :||..|||...||:::::|.|.||::||:|:.:.:|....|  
  Rat   278 TQPIDSRAEHLCVYWEGSEEGGSWSTKGCSHVYTNKSYTICKCFHLSSFAVLVGLSNEENAVL-- 340

  Fly   761 MFDGNMRIFIYISIGICVVFIVIALLTLKLFNGVFVKSARTSIYTSIYLCLLAIELLFLLGIEQT 825
               ..:.:..|:.:.:.::.:.:|.:|..|...  :::..|:::..:.:||...:||||:||.:|
  Rat   341 ---SALSVITYVGLSLSLLCLFLAAITFLLCRP--IQNTSTTLHLQLSICLFLADLLFLIGINRT 400

  Fly   826 ETSIFCGFITIFLHCAILSGTAWFCYEAFHSYSTLTSDELLLEVDQTP-----KVNCYYLLSYGL 885
            :..:.|..|...||...|:...|...|..|.:.|:.:    |:|....     |....|.:.||.
  Rat   401 KPKVLCSIIAGMLHYLYLASFMWMFLEGLHLFLTVRN----LKVANYSHSGRFKKRLMYPVGYGF 461

  Fly   886 SLSVVAISLVIDPSTYTQNDYCVLMEANALFYATFVIPV-LVFFVAAIGYTFLSWIIMCRKSRTG 949
            ...:||:|.:.....|...::|.| ..:..|..:|:.|| .:..:..:.|..:.||:   :|:..
  Rat   462 PALIVAVSAIAGHKNYGTYNHCWL-SLHRGFIWSFLGPVAAIILINLVFYFQVLWIL---RSKLS 522

  Fly   950 LKTKEHTRLASVRFDIRCSFVFLLLLSAVWCSAYFYLRGAKMDDDTADVYGYCFICFNTLLGLYI 1014
            ...||.:.|...:.....:.|.|.:|...|....|..  .::......::.|.|...|.|.|:.|
  Rat   523 SLNKEVSTLQDTKIMTFKAIVQLFVLGCSWGIGLFIF--FEVGKTVRLIFAYLFTIINVLQGVLI 585

  Fly  1015 FVFHCIQNEKIRREYRKYVRQHAWLPKCLR------------CSKTSISSGIVTGNGPTAGTL 1065
            |:.||:.|.::|.||:|      |..:..|            .:.|.:.|.:.|.|....|.|
  Rat   586 FLVHCLLNRQVRMEYKK------WFHRLQRETESESTELSHSTTHTKMGSSLKTENFCQTGNL 642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CirlNP_001260807.1 Gal_Lectin 33..113 CDD:280328
GAIN 453..680 CDD:293098 43/234 (18%)
GPS 705..752 CDD:197639 17/48 (35%)
7tm_4 763..1014 CDD:304433 56/256 (22%)
Adgre4NP_001007559.1 EGF_CA 75..>103 CDD:214542 8/43 (19%)
GAIN <209..261 CDD:406802 14/75 (19%)
GPS 287..329 CDD:396408 16/41 (39%)
7tm_GPCRs 342..606 CDD:421689 66/281 (23%)
TM helix 1 342..367 CDD:410628 3/24 (13%)
TM helix 2 376..398 CDD:410628 8/21 (38%)
TM helix 3 407..434 CDD:410628 7/26 (27%)
TM helix 4 451..471 CDD:410628 6/19 (32%)
TM helix 5 488..511 CDD:410628 4/22 (18%)
TM helix 6 535..563 CDD:410628 5/29 (17%)
TM helix 7 568..593 CDD:410628 9/24 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12011
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.100

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