DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cirl and mth-2

DIOPT Version :10

Sequence 1:NP_001260807.1 Gene:Cirl / 35846 FlyBaseID:FBgn0033313 Length:1711 Species:Drosophila melanogaster
Sequence 2:NP_001364698.1 Gene:mth-2 / 173752 WormBaseID:WBGene00017947 Length:971 Species:Caenorhabditis elegans


Alignment Length:1157 Identity:203/1157 - (17%)
Similarity:368/1157 - (31%) Gaps:374/1157 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 VEWSVNCMFPK------SLSVLNSRCAHKQ------SCGVLAATSMF------------------ 96
            :|:.||..|..      :.:|||....|.|      :||:|.....|                  
 Worm    41 MEFQVNVGFSNDGYAVFTTAVLNMTPYHFQMYVNGRNCGLLTLQCKFQLQPNESLNIVLDKIDMQ 105

  Fly    97 ----------GDPCPGTHKYLEAHYQ----CISAAQTSTTTNRPSPPPWVLSNGPPIFGNGSGLI 147
                      |...|..  |:...|:    |...:|.||.|.                    |.:
 Worm   106 SNLMTFTYRGGKKDPDV--YINGCYESMSSCAYGSQQSTDTR--------------------GTL 148

  Fly   148 HPPGVGAGAPPPPRLPTLPGVVGISGNPGLFNVPPQHTAVTH-----STPSSSTTAVGGGRLKGG 207
            :...:.|.....|..........||..| .:|..|...:.|.     |:.|.||:..........
 Worm   149 YQDSICACVGSFPTCLFSENDTCISNRP-FWNYDPPTASTTEEIDTSSSTSRSTSTPSSTEASST 212

  Fly   208 ATSTTTTKHPAGRHDGLPPPPQLHHHHNHHGEDTASPTKPSSKLPAGGNATSPSNTRILTGVGGS 272
            .|||||.:...                      |..||.|::        |:.::|..:|.:..|
 Worm   213 VTSTTTARTTT----------------------TMIPTTPTT--------TTIASTSTVTSIVTS 247

  Fly   273 GTDDGTLLTTKSSPNRPPGTAASGSVVPGNGSVVRTINNINLNAAGMSGGDDESKLFCGPTHARN 337
            .|...|.:.|.:.....|.|.|: |......|...|..:.:.:...::...:.:.....||.:  
 Worm   248 TTVTSTTVPTTTVVTTVPTTTAT-STSTSTASTTTTTPSTSTHTTTVTYSTNATSSTTSPTTS-- 309

  Fly   338 LYWNMTRVGDVNVQPCPGGAAGIAKWRCVLMKRIPDS--GYDEYDDDISSTTPAPSGGDCLHNSS 400
                      ...:|.|...|.:.   ...:|.:.||  |.:.....::.|......|..|:.:.
 Worm   310 ----------PTPEPEPTTTATVL---APTLKNLSDSGVGINNVSTVLNETLTYSEMGANLNATQ 361

  Fly   401 SCEPPVSMAHKVNQRLRNFEPTWHPATPDLTQCRSL-WLNNLEMRVNQRDSSLISIANDMSEVTS 464
            ..|....:.:..|             .|.||...|: .|:||:..:....:.:....|....|.:
 Worm   362 VAEISTILINSAN-------------VPGLTAENSMAILHNLDNMLYVSPTIMYQSGNSAQGVLN 413

  Fly   465 SKTLYGGDMLVTTKIIQTVSEKMMHDKETFPDQRQREAMIMELLHCVVKTGSNL------LDESQ 523
            |         :.|.:..||            |||      :|.|:     |.||      ||.|.
 Worm   414 S---------LGTMVDNTV------------DQR------IEYLN-----GQNLGFSSKRLDCSN 446

  Fly   524 LSS---WLDLNPEDQMRVATSLLTGLEYNAFLLADTIIRERSVVQKVKNILLSVRVLETKTIQSS 585
            |.:   .|||..:.::..:|..|.  ::::.|:.   :.:....|.:.::..::       .:.:
 Worm   447 LGADDGLLDLGSKFELINSTDSLG--KWHSILVP---LSDLCSTQDLSHVFFTI-------YRDT 499

  Fly   586 VVFPDSDQW--------PLSSDRIE-------LPRAALIDNSEGGLVRIVFAAFDRLESILKPSY 635
            .:|....|:        |:||...|       :||:|....:|                      
 Worm   500 SLFVGPQQYRTYTGTNKPISSGEAETYTPPPRVPRSAGFYEAE---------------------- 542

  Fly   636 DHFDLKSSRSYVRNTAILSNDSDVNAGEIQQRLRILNSKVISASL---GKGRHIQLSQPITLTLK 697
                     .|..|    :....|......::..:..:.|:||::   |....:..:...|:.|.
 Worm   543 ---------PYQMN----ATSQTVPLSPCARQTSLPPTPVMSATVMNNGVAVSVSATSEATMALL 594

  Fly   698 HLKTENVTNP-----TCVFWNYIDHAWSAN-GCSLESTNRTHSVCSCNHLTNFAILMDVVDEHQH 756
            ......:..|     ...:|:...:||:.: .|.:.|.:.......|.|||:|||::|.      
 Worm   595 RFNISTLMKPLHGNLKVTWWDIGRNAWAEDRQCEIVSESDGILEARCTHLTDFAIIVDA------ 653

  Fly   757 SLFTMFDGNMRIFIYISIGICVVFI-VIALLTLKLFN-GVFVKS-ARTSIYTSI----------- 807
               .:.|.|:.....|::|..|..: :::|..|..|: ..::.| |.:.:|:.:           
 Worm   654 ---ALNDPNVCDNALITLGYVVNGLSIVSLAFLTFFSISAYINSLANSRLYSYVRGHNLARRDFL 715

  Fly   808 ----YLCLLAIELLFLLGIEQTETSIFCGFITIFLHCAILSGTAWFCYEAFHSYSTLTSDELLLE 868
                :..||...:.|.:...|..:...|..:...::..:|.......::|..:         :|.
 Worm   716 ALIYHFDLLLFYVFFTVFSNQDVSGDMCTAMAAVMYALLLCSLFLTIFQALRN---------ILV 771

  Fly   869 VDQTPKVNCYYLLS--YG---LSLSVVAISLVI--------------DPSTYTQNDYCVLMEANA 914
            ...||   .|.||:  :|   :.::.||:..::              |...:.:.||.|      
 Worm   772 FLPTP---AYRLLNICFGTVPVLITSVALPFILSIFLLVFTKFFDRQDCFCWVRPDYIV------ 827

  Fly   915 LFYATFVIPVLVFFVAAIGYT-FLSWIIMCRKSRTGLKTKEH------TRLASVRFDIRCSFVFL 972
               |..:|||.|..::.:..| |:.:.:.|...|...:...|      |::.|:       .|..
 Worm   828 ---AAIIIPVTVLLLSTVVCTSFMIYKVFCGMKRKFSQGGHHYDPNVITKIVSI-------VVMQ 882

  Fly   973 LLLSAVWCSAYFYLRGAKMDDDTADVYGYCFICFNTLLG------LYIFVFHCIQNEKIRREYRK 1031
            :.|...|...:    |......|.    :....|..:||      |.||:               
 Worm   883 ISLGLPWILQF----GTLYSPYTT----FWHYTFTIVLGSQGTILLLIFL--------------- 924

  Fly  1032 YVRQHAWLPKCLRCSKTSISSGIVTGNGPTAGTLCSVSTSKKPKLPLGVSEE 1083
            |.|..||.      :.:::.|         .|...|.:::|:.||   |.||
 Worm   925 YKRYRAWQ------ADSTLKS---------RGQSYSKNSTKRTKL---VEEE 958

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CirlNP_001260807.1 Gal_Rha_Lectin_dCirl 22..113 CDD:438687 17/94 (18%)
GAIN 451..682 CDD:465137 41/257 (16%)
GPS 705..752 CDD:197639 14/52 (27%)
7tmB2_CELSR_Adhesion_IV 763..1035 CDD:320557 55/321 (17%)
TM helix 1 765..790 CDD:320557 6/25 (24%)
TM helix 2 801..823 CDD:320557 4/36 (11%)
TM helix 3 832..859 CDD:320557 2/26 (8%)
TM helix 4 875..895 CDD:320557 6/24 (25%)
TM helix 5 913..942 CDD:320557 7/29 (24%)
TM helix 6 960..987 CDD:320557 4/26 (15%)
TM helix 7 997..1022 CDD:320557 6/30 (20%)
Herpes_TAF50 <1219..1365 CDD:308764
mth-2NP_001364698.1 GPS 607..656 CDD:197639 13/57 (23%)
7tm_GPCRs 662..933 CDD:475119 56/327 (17%)
TM helix 1 665..690 CDD:410628 6/24 (25%)
TM helix 2 706..734 CDD:410628 3/27 (11%)
TM helix 4 782..796 CDD:410628 1/13 (8%)
TM helix 5 824..846 CDD:410628 8/30 (27%)
TM helix 6 872..897 CDD:410628 6/35 (17%)
TM helix 7 902..927 CDD:410628 7/43 (16%)
Blue background indicates that the domain is not in the aligned region.

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