DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8642 and Tnn

DIOPT Version :9

Sequence 1:NP_610396.2 Gene:CG8642 / 35845 FlyBaseID:FBgn0033312 Length:429 Species:Drosophila melanogaster
Sequence 2:NP_001100659.2 Gene:Tnn / 304913 RGDID:1306002 Length:1562 Species:Rattus norvegicus


Alignment Length:444 Identity:125/444 - (28%)
Similarity:194/444 - (43%) Gaps:99/444 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 KSTTKAPVKEIPPTNGTQIGNVTAVAPVPEKLAEVHIDQHKTIRISKGDLDDLLDVYMGKIAESA 90
            |:.||||         |:|.:       |:.|....:.:: |..||...:...:|.||  :..::
  Rat  1138 KAKTKAP---------TEIDS-------PKNLVTNRVTEN-TATISWDPVRATIDRYM--VRYTS 1183

  Fly    91 ATIKDKENEINKLQTKDQTGDEL--LRKFENLTQVCSAQQSSFTTAIKEKDEQIKELEQ------ 147
            |..:.||..:    :|||:...|  |:.....|....||:.    |.:.|....|.|.:      
  Rat  1184 ADGETKEVPV----SKDQSSTILTGLKPGMEYTIHVWAQKG----ARESKKADTKALTEIDPPKN 1240

  Fly   148 --------------------KVKVYETRLKRKQHVLAELRKLNGSSALLIEHLKGKVVY------ 186
                                ::..|....:....:|.|:....|.....::.|:..|.|      
  Rat  1241 FRPFGVTHSSGVLTWMPPSAQIDGYILTYQLPNGILKEVELQRGQQRFELQDLEQGVTYPVSLVA 1305

  Fly   187 FERKFREKKDDLLADWEAATTSCVPFGRSP-----------------GIHLIHLPG--FLPFLVP 232
            |:...|.:        ..:||......|.|                 |::.|:|.|  ..|..|.
  Rat  1306 FKGNQRSR--------SVSTTLSTVDARFPHPSDCSQVQQNTNAAASGLYTIYLNGDASRPMQVY 1362

  Fly   233 CEGQTAAGPGWTCIQRRLDGSVNFYRNWDAYSKGFGKLNGEFFIGLEKLHRLT--SSQPHELYIS 295
            |:..|..| ||...|||..|.::|::.|.:|.:|||....||::||:|||.||  ::..:|:...
  Rat  1363 CDMDTDGG-GWIVFQRRNTGQLDFFKRWRSYVEGFGDPMKEFWLGLDKLHNLTTGTTTRYEVRAD 1426

  Fly   296 IRRFGGETSYAHYDDFLIGSEEEGYELKLLGHYQGNASDALRTHDKMKFSTYDRDNDAFTHMNCA 360
            ::. ..|::||.||.|.:.|.:|.|:|. :|.|:|.|.|||..|:..||:|:||||| ....|||
  Rat  1427 LQT-ANESAYAVYDFFQVASSKERYKLS-VGKYRGTAGDALTYHNGWKFTTFDRDND-IALSNCA 1488

  Fly   361 EHHQGAWWYDFCSRSNLNGRYFKGEVDNPQSIYWEPW--YSFRSLKSVQMLIRP 412
            ..|.|.|||..|..:|.||:|  ||..:.:.:.||||  :.| |:..|::.|||
  Rat  1489 LTHHGGWWYKNCHLANPNGKY--GETKHSEGVNWEPWKGHEF-SIPYVELKIRP 1539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8642NP_610396.2 GluZincin 72..>163 CDD:301352 19/118 (16%)
FReD 213..413 CDD:238040 84/223 (38%)
TnnNP_001100659.2 EGF_2 <142..166 CDD:285248
EGF_2 169..197 CDD:285248
EB 181..233 CDD:279949
EGF_2 233..259 CDD:285248
fn3 264..332 CDD:278470
fn3 359..434 CDD:278470
fn3 444..521 CDD:278470
FN3 532..608 CDD:214495
FN3 620..696 CDD:214495
fn3 708..785 CDD:278470
fn3 796..875 CDD:278470
fn3 884..961 CDD:278470
fn3 972..1049 CDD:278470
FN3 1060..1136 CDD:214495
FN3 1148..1224 CDD:214495 20/93 (22%)
fn3 1236..1313 CDD:278470 9/76 (12%)
FReD 1327..1540 CDD:238040 83/220 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2579
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm12326
orthoMCL 1 0.900 - - OOG6_100073
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.710

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