DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8642 and tnc

DIOPT Version :9

Sequence 1:NP_610396.2 Gene:CG8642 / 35845 FlyBaseID:FBgn0033312 Length:429 Species:Drosophila melanogaster
Sequence 2:XP_004916768.1 Gene:tnc / 100494697 XenbaseID:XB-GENE-1002816 Length:1829 Species:Xenopus tropicalis


Alignment Length:433 Identity:129/433 - (29%)
Similarity:197/433 - (45%) Gaps:80/433 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 KEIPPTNGTQIGNVTAVAPVPEKLAEVHIDQHKTIRI---SKGDLDDLLDVYMGKIAESAATIKD 95
            :|..|.:||    .|.....|..|..|:|.:...:.:   |...:|:.:..|..|.| .|.|...
 Frog  1414 EESEPASGT----FTTALDSPSGLKVVNITESDALALWQPSLASVDNYVFSYSAKNA-PAVTHSI 1473

  Fly    96 KENEI-NKLQTKDQTGDELLRKFENLTQVCSAQQSS-FTTAIK-EKDEQIKELEQK--------- 148
            ..|.: |.|.....:.:..::.:....|..||:.|: ||||:. .:|....|::.:         
 Frog  1474 SGNTVENDLIGLHPSTEYTVKVYAVRGQHRSAEISTKFTTALDGPRDLSASEIQSESALLTWKPP 1538

  Fly   149 -------VKVYET--------------------RLKRKQHVLAELRKLNGSSALLIEHLKGKVVY 186
                   |.:||:                    .|......:|.::.:||               
 Frog  1539 RSTITGYVLIYESVDGTVKEVVVGPDTTSYRLLDLSPSAQYIARVQAING--------------- 1588

  Fly   187 FERKFREKKD-----DLLADWEAATTSCVPFGRS-PGIHLIHLPG--FLPFLVPCEGQTAAGPGW 243
             :|:.:|.:.     .||..:....:..:..|.: .|::.|::.|  ..|..|.|: .:..|.||
 Frog  1589 -DRRSKEIQTIFITIGLLYPYPKDCSQALLNGEADSGLYTIYVNGDQSQPMEVYCD-MSVDGGGW 1651

  Fly   244 TCIQRRLDGSVNFYRNWDAYSKGFGKLNGEFFIGLEKLHRLTSSQPHELYISIRRFGGETSYAHY 308
            ....||.|||..|||||..||.|||.:|.|||:|||.||:|||...:||.:.:|. ..||:||.|
 Frog  1652 IVFLRRTDGSEEFYRNWKTYSAGFGNINNEFFMGLENLHKLTSLGQYELRVDLRD-NDETAYAVY 1715

  Fly   309 DDFLIGSEEEGYELKLLGHYQGNASDALRTHDKMKFSTYDRDND-AFTHMNCAEHHQGAWWYDFC 372
            |.|.:|..:..:.||:.| |.|.|.|::..|:...|||:|:||| |.|  |||..::||:||..|
 Frog  1716 DKFSVGDAKSRFRLKVEG-YSGTAGDSMTYHNGRSFSTFDKDNDSAIT--NCALSYKGAFWYKNC 1777

  Fly   373 SRSNLNGRYFKGEVDNPQSIYWEPWYSFR-SLKSVQMLIRPKS 414
            .|.||.|||  |:.::.|.:.|..|.... |::..:|.|||.|
 Frog  1778 HRVNLMGRY--GDTNHSQGVNWFHWKGHEYSIQFAEMKIRPVS 1818

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8642NP_610396.2 GluZincin 72..>163 CDD:301352 23/129 (18%)
FReD 213..413 CDD:238040 87/204 (43%)
tncXP_004916768.1 EGF_Tenascin 187..214 CDD:376143
EGF_Tenascin 249..276 CDD:376143
EGF_Tenascin 280..307 CDD:376143
DSL <295..337 CDD:366627
EGF_Tenascin 342..369 CDD:376143
EGF_Tenascin 373..399 CDD:376143
EGF_Tenascin 404..431 CDD:376143
EGF_Tenascin 435..461 CDD:376143
EGF_Tenascin 466..492 CDD:376143
EGF_Tenascin 497..524 CDD:376143
EGF_Tenascin 528..554 CDD:376143
EGF_Tenascin 559..586 CDD:376143
EGF_Tenascin 590..617 CDD:376143
fn3 620..691 CDD:365830
fn3 713..789 CDD:365830
fn3 799..877 CDD:365830
fn3 887..969 CDD:365830
fn3 979..1056 CDD:365830
fn3 1074..1147 CDD:365830
fn3 1158..1230 CDD:365830
fn3 1249..1329 CDD:365830
fn3 1339..1418 CDD:365830 1/3 (33%)
fn3 1428..1506 CDD:365830 16/78 (21%)
fn3 1518..1594 CDD:365830 10/91 (11%)
FReD 1607..1817 CDD:238040 87/216 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9330
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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