DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8642 and fga

DIOPT Version :9

Sequence 1:NP_610396.2 Gene:CG8642 / 35845 FlyBaseID:FBgn0033312 Length:429 Species:Drosophila melanogaster
Sequence 2:XP_002933535.3 Gene:fga / 100038060 XenbaseID:XB-GENE-478771 Length:761 Species:Xenopus tropicalis


Alignment Length:462 Identity:136/462 - (29%)
Similarity:196/462 - (42%) Gaps:105/462 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 VPSKIKSTTKAPVKEIPPT-NGTQIGNVTAVAPVPEKLAEVHIDQ--------HKTIRISKG-DL 75
            |..::.||.:.|.:||..| :|         .|..|||.::..|.        .:.|.||.| .|
 Frog   330 VKRRVVSTPEGPKEEITETYSG---------GPECEKLGKLSTDDTFQGGSDGTRVIHISGGSSL 385

  Fly    76 DDLLDV--------YMGKIAESAATIKDKENEINKLQTKDQTGDELLRKFENLTQVCSAQQSSFT 132
            .|:..:        ..||..:::.| ....:..:|: |.|...|....:|::.:.. .....|||
 Frog   386 GDISKIPSFEEFLSSSGKKTQTSQT-SSSSSSSSKV-THDVFTDLGEDEFDDFSHT-GLDSPSFT 447

  Fly   133 TAIKEKDEQIKELEQKVKVYETRLKRKQHVLAELRKLNGSS----ALLIEHLKGKVVY------- 186
            ...||....|.:.                |::......|||    ...|:.:|...|:       
 Frog   448 PLQKEGSSTITKT----------------VVSSSSSSRGSSKDGTQFDIKSMKSGPVFTDFGPIQ 496

  Fly   187 ----------FERKFREKKDDLLADWEAATTSCV----PFGRSPGIHLIHLPGFLPFL-VPCEGQ 236
                      |:.:...|:..|:.|:.......:    ..|...||..|...|....| |.|:..
 Frog   497 HDNSEEDRPDFQARTVRKEMKLVGDYTGKDCDDIRQKHSSGAKSGIFKIRPEGSTKVLSVYCDQD 561

  Fly   237 TAAGPGWTCIQRRLDGSVNFYRNWDAYSKGFGKLN----GEFFIGLEKLHRLTSSQPHELYISIR 297
            |..| ||..||:|.||||||.|.|..|..|||.::    ||.::|.|.:|.||.... .|.|.:.
 Frog   562 TQLG-GWILIQQRQDGSVNFNRTWQDYKNGFGSVDAGGKGEVWLGNENIHLLTQKDT-ILRIELE 624

  Fly   298 RFGGETSYAHYDDFLIGSEEEGYELKLLGHYQGNASDAL----------RTHDKMKFSTYDRDND 352
            .:.||..||.| :..:|||.||:.|| :..|:|.|.|||          .:|..|||||||||:|
 Frog   625 DWSGEKVYAEY-NIQLGSEAEGFTLK-VSQYEGTAGDALIEGSKEDGEYTSHINMKFSTYDRDSD 687

  Fly   353 AFTHMNCAEHHQGAWWYDFCSRSNLNGRYFKG-----------EVDNPQSIYWEPWYSF-RSLKS 405
            .:.. ||||.:.|.|||:.|..|||||.|:.|           |::|  .:.|.|:.:. .|||:
 Frog   688 KWEE-NCAEMYGGGWWYNNCQASNLNGIYYIGGQYDPRNNFPYEIEN--GVVWVPFKAADYSLKT 749

  Fly   406 VQMLIRP 412
            |:|.:||
 Frog   750 VRMKMRP 756

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8642NP_610396.2 GluZincin 72..>163 CDD:301352 17/99 (17%)
FReD 213..413 CDD:238040 92/227 (41%)
fgaXP_002933535.3 Fib_alpha 51..191 CDD:400857
Fibrinogen_aC 299..372 CDD:403400 13/50 (26%)
FReD 523..757 CDD:238040 92/241 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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