Protein Alignment rgr and CG4730

DIOPT Version :9

• Sequence 1: NP_001163089.2
• Gene: rgr / 35843
• FlyBaseID: FBgn0267792
• Length: 889
• Species: Drosophila melanogaster
• Sequence 2: NP_001262965.1
• Gene: CG4730 / 43099
• FlyBaseID: FBgn0039355
• Length: 392
• Species: Drosophila melanogaster
• Alignment Length: 474
• Identity: 97/474 - (20%)
• Similarity: 167/474 - (35%)
• Gaps: 142/474 - (29%)

  Fly   420 LRCVIENRRAEREAK-ISNESTESEKSCETDADSCGKSSLYHEVLSFILD---AFKRQECLWNPQ 480
            |...|..|.||...| :|:|.:.|:.:...:..:|.:..|.....:.:||   .:.::..|   .
  Fly    12 LNFTIARRTAEAPVKLVSHEVSLSDSTTSLELSNCCRLCLEEPYPNQMLDMTVIYDQEAAL---S 73

  Fly   481 HYD-YTTCCKTELFRDISVQLQEELNYELSGEECCNEIQKLRTRYRKELRMVIKHKGLYLPKLWC 544
            :|| |..|.|.:|.::..                 ||.:.|..|...||:             |.
  Fly    74 YYDCYEICTKEDLRQNPK-----------------NEPRTLCKRCAVELK-------------WA 108

  Fly   545 YDEMEFLQPILQEQIFNKISKKIGVVGSNQKTKFIDASSIRFDNTEKQLQFVEIYHNYSALWDVD 609
            ||                ..||:.:.....:..|:...:    |||::             .||:
  Fly   109 YD----------------FHKKMAIANQQLREIFVATEA----NTEQE-------------DDVE 140

  Fly   610 HPDFRSNTYRSQALGQMLDEINTTFHTSYTAEQLEKTLFNLRKEFSAQKRKILTESEDSSSIPLL 674
                              ||.|..               ::.:||      ::.|.|:....|:
  Fly   141 ------------------DEENEA---------------DMNEEF------LMEEIEEKQETPI- 165

  Fly   675 HAKLAEFLDQNLGPFRCDICSDLVKTCDQYKVHRSAHDGTQPFICTLCGKGFQMPCNLTVHIRRH 739
                             |...|:|.        |:.|.|...  |..|.|.|:....:..|...|
  Fly   166 -----------------DSLEDIVP--------RNRHTGKSN--CKFCHKEFRNHSRMAKHQMIH 203

  Fly   740 RRDFP-YSCEQCDKRFATSTEVAIHLRTHTGERPYICDLCGKSFKTWSFFDIHRRRHLNQSTFHC 803
            ..:.| :.|.|||:.:.|...:.:|:.:...:....||.|||.|......:||:|.|.....:.|
  Fly   204 LANRPNFRCSQCDRVYLTKQALKVHVDSKHRQSGVHCDTCGKVFAIAKALEIHKRYHNRDFPYSC 268

  Fly   804 PICAKGFYEKNRFTDHMNSHWAIRKHLCTV--CGKTFTTYGNLKKHTELHLAVKKYKCGTCGKRF 866
            .:|.:.|.:::..|.|.....:..:.:|..  |.|:||:..:|:.|...|.|: .::|..|.:.:
  Fly   269 DLCDRRFAQRSHLTVHQQVKHSGSRFICEFPGCQKSFTSSSSLRNHECTHTAM-PFECAHCHQSY 332

  Fly   867 AQFASLRWHKKREHSSVGQ 885
            .....||.|.:|:|:.|.|
  Fly   333 PARNKLRMHLERKHNMVVQ 351

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rgr	NP_001163089.2	MADF_DNA_bdg	335..420	CDD:287510	97/474 (20%)
		MADF_DNA_bdg	465..551	CDD:287510	18/89 (20%)
		MADF_DNA_bdg	595..682	CDD:287510	10/86 (12%)
		C2H2 Zn finger	691..711	CDD:275368	4/19 (21%)
		C2H2 Zn finger	719..739	CDD:275368	5/19 (26%)
		zf-H2C2_2	731..756	CDD:290200	7/25 (28%)
		COG5048	742..>824	CDD:227381	22/82 (27%)
		C2H2 Zn finger	747..767	CDD:275368	6/19 (32%)
		zf-H2C2_2	763..784	CDD:290200	7/20 (35%)
		C2H2 Zn finger	775..795	CDD:275368	9/19 (47%)
		C2H2 Zn finger	803..818	CDD:275368	3/14 (21%)
		C2H2 Zn finger	831..851	CDD:275368	7/21 (33%)
		C2H2 Zn finger	859..877	CDD:275368	5/17 (29%)
CG4730	NP_001262965.1	zf-AD	46..124	CDD:285071	22/126 (17%)
		C2H2 Zn finger	183..203	CDD:275368	5/19 (26%)
		C2H2 Zn finger	212..232	CDD:275368	6/19 (32%)
		C2H2 Zn finger	240..260	CDD:275368	9/19 (47%)
		C2H2 Zn finger	268..289	CDD:275368	5/20 (25%)
		C2H2 Zn finger	296..318	CDD:275368	7/21 (33%)
		C2H2 Zn finger	325..346	CDD:275368	6/20 (30%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45468415
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930