DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rgr and CG4820

DIOPT Version :9

Sequence 1:NP_001163089.2 Gene:rgr / 35843 FlyBaseID:FBgn0267792 Length:889 Species:Drosophila melanogaster
Sequence 2:NP_001097748.1 Gene:CG4820 / 41344 FlyBaseID:FBgn0037876 Length:362 Species:Drosophila melanogaster


Alignment Length:423 Identity:96/423 - (22%)
Similarity:152/423 - (35%) Gaps:132/423 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   446 CETDADSCGKSSLYHEVLSFILDAFKR-QECLWNPQHYDYTTCCKTELFRDISVQLQEELNYELS 509
            |.|    |||:.:..|.|.....|.:: .:|:.:      .|.|..:..:|:...:..:....||
  Fly     5 CRT----CGKTVVADECLQIFTPAGRKLLQCVRS------ITNCWLQNVQDLPNHICTDCQVLLS 59

  Fly   510 GEECCNEIQKLRTRYRK-ELRMVIKHKGLYLPKLWCYDEMEFLQPILQEQIFNKISKKIGVVGSN 573
                  ::||.|.|..| |.....:.:.:.|.:          .|...||:..:.:.....:|.:
  Fly    60 ------QVQKFRRRCAKIEKYFARRRRRMNLGE----------APAAMEQLRVQQAAAPDPLGID 108

  Fly   574 QKTKFIDASSIRFDNTEKQLQFVEIYHNYSALWDVDHPDFRSNTYRSQAL--------------- 623
            :   .:.||.|:.:..  |||..|         |...| :..|.. .|||               
  Fly   109 E---LMSASDIKIEPI--QLQMEE---------DPQAP-YPENQL-EQALSYGNAPGEDILPLPE 157

  Fly   624 --GQMLDEINTTFHTSYTAEQLEKTLFNLRKEFSAQK--RKILTESEDSSSIPLLHAKLAE---- 680
              |:...|:.||  |:..|::..|....::.:....:  ||            |:|.|:.:    
  Fly   158 DYGEAQTEVATT--TNEPAQRRSKNTAKIKSKKHTMRVGRK------------LIHVKVIDDKQP 208

  Fly   681 --FLDQNLGPFRCDICSDLVKTCDQYKVHRSAHDGTQPFICTLCGKGFQMPCNLTVHIRRHRRDF 743
              .:|:| ||                        ..:|.||..||:.|:...||.||:.||....
  Fly   209 KRIVDRN-GP------------------------SAKPCICEHCGRQFKDTSNLHVHLLRHTGTK 248

  Fly   744 PYSCEQCDKRFATSTEVAIHLRTHTGERPYICDLCGKSFKTWSFFDIHRRRHLNQS--------- 799
            |:.|:||.::..|...:..|...|| |.||.|..||..:.|.|    .|.||..::         
  Fly   249 PFECDQCHQKCYTLHLLRRHQLKHT-EGPYACTFCGLEYSTNS----SRVRHEREACKKGRAPQS 308

  Fly   800 ----------TFHCPICAKGFYEKNRFTDHMNS 822
                      ||||.:|...|.....||.|:||
  Fly   309 KWEIIKKGERTFHCEVCDLWFLRAGNFTQHINS 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgrNP_001163089.2 MADF_DNA_bdg 335..420 CDD:287510
MADF_DNA_bdg 465..551 CDD:287510 14/87 (16%)
MADF_DNA_bdg 595..682 CDD:287510 19/111 (17%)
C2H2 Zn finger 691..711 CDD:275368 0/19 (0%)
C2H2 Zn finger 719..739 CDD:275368 8/19 (42%)
zf-H2C2_2 731..756 CDD:290200 10/24 (42%)
COG5048 742..>824 CDD:227381 30/100 (30%)
C2H2 Zn finger 747..767 CDD:275368 5/19 (26%)
zf-H2C2_2 763..784 CDD:290200 9/20 (45%)
C2H2 Zn finger 775..795 CDD:275368 6/19 (32%)
C2H2 Zn finger 803..818 CDD:275368 4/14 (29%)
C2H2 Zn finger 831..851 CDD:275368
C2H2 Zn finger 859..877 CDD:275368
CG4820NP_001097748.1 zf-AD 4..75 CDD:285071 20/85 (24%)
C2H2 Zn finger 224..244 CDD:275368 8/19 (42%)
C2H2 Zn finger 252..272 CDD:275368 5/19 (26%)
C2H2 Zn finger 279..297 CDD:275368 8/21 (38%)
C2H2 Zn finger 322..339 CDD:275368 5/16 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45457234
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.