DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rgr and scrt

DIOPT Version :9

Sequence 1:NP_001163089.2 Gene:rgr / 35843 FlyBaseID:FBgn0267792 Length:889 Species:Drosophila melanogaster
Sequence 2:NP_001261390.1 Gene:scrt / 38469 FlyBaseID:FBgn0004880 Length:653 Species:Drosophila melanogaster


Alignment Length:732 Identity:145/732 - (19%)
Similarity:241/732 - (32%) Gaps:187/732 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   243 REPNTGNAMQRKLRQSQNEQPKDGAVDEVAVEEHKGTEPTGQP-----EKSAMELTPPATPPTPL 302
            |..:|.|..|:: .||....|::  ::|:.::..:.|....:.     :|..::|....| ....
  Fly    18 RTEDTSNQQQQQ-EQSAPNSPRE--LEELHLKSRRSTLDDDEEIDVVGDKFLIKLEKQRT-TADA 78

  Fly   303 PPTSPTSSTASCADFQSKSRRELERNHEFVGCLLREYERTEKLWNPRHPDYKYNA------KRSA 361
            ...:.|||.|:.:...:.|..|....           ..|.|.|.|..|.....|      ...|
  Fly    79 AAAAATSSEAATSHSSNSSNMEASAT-----------TTTSKCWGPSSPTAGTTAPSPPPHSPEA 132

  Fly   362 YGDLAGPLESICHRQLSGAEIFAVLKELRCRYRRELKKVNAL-----------GGKYKSRLWYFE 415
            ...:||.:.:...|:||.....|.|.    |...|:..:.|.           .|.....|..::
  Fly   133 ATRVAGNVYNGYTRELSPLHYTAYLP----RMESEITVIRAAATALVAARTSGNGSGDQHLAAYQ 193

  Fly   416 -----RMDFLRCVIENRRAEREAKISNESTESEKSCETDADSC-----GKSSLYHEVLSFILDAF 470
                 ......| ..:...:|.:.:|:..|.||:.|.:...:.     .|..:|.   .:.||. 
  Fly   194 TPPSSTTSSPSC-SPSGAGDRYSPLSSGQTSSERKCFSSTGATLSLPPKKKDIYR---PYSLDD- 253

  Fly   471 KRQECLWNPQH-YDYTTCCKTEL-----FRDISV-----------QLQEELNYELSGEECCNEIQ 518
                   .|.| |......:.:|     ..|:|.           |||::...:          |
  Fly   254 -------KPAHGYRRRVPAEEDLHAAHAILDLSASTAFHPPTQPHQLQQQQQQQ----------Q 301

  Fly   519 KLRTRYRKELRMVIKHKGLYLPKLWCYDEMEFLQPILQEQIFN-------------------KIS 564
            :....:..:.:.:...:..|||          ||...|:|..:                   :::
  Fly   302 QQHQHHHSQQQHLAPQQHHYLP----------LQQQQQQQAHHTHLPTLEAHAHLRSTSSIAELA 356

  Fly   565 KKIGVVGSNQKTKFIDASSIRFDNTEKQLQFVEIYHNYSALWDVDHPDFRSNTYRSQALGQMLDE 629
            ....||  |::....:|||...::....                  |...|::..||...:..:.
  Fly   357 AAASVV--NEQRPASNASSASSNHMPSS------------------PSSNSSSSSSQVQNENSNT 401

  Fly   630 INTT----------FHTSYTAEQLEKTLFNLRKEF---SAQKRK-ILTESEDSSSIPLLHAKLAE 680
            .||.          .|:..:....:...:.....|   ...||| :...:..:|.:|.       
  Fly   402 TNTNPDGDGCLQDGEHSGASGASAKTVAYTYEAFFVSDGRSKRKHVADPAAAASGVPT------- 459

  Fly   681 FLDQNLGPFRCDICSDLVKTCDQYKVHRSAH---DGTQPFICTLCGKGF-QMPCNLTVHIRRHRR 741
             .||....:.|..|.....|......|:..|   |......|..|||.: .||. |.:|:..|: 
  Fly   460 -PDQQKTKYTCSECGKQYATSSNLSRHKQTHRSLDSQSAKKCHTCGKAYVSMPA-LAMHLLTHK- 521

  Fly   742 DFPYSCEQCDKRFATSTEVAIHLRTHTGERPYICDLCGKSFKTWSFFDIHRRRHLNQSTFHCPIC 806
             ..:||..|.|.|:....:..|||:||||:||.|..|||:|...|....|.:.|.....|.|..|
  Fly   522 -LSHSCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSVDKNFECKRC 585

  Fly   807 AKGFYEKNRFTDHMNSHWAIRKHLCTVCGKTFTTYGNLKKHTELHLAVKKYKCGTCGKRFAQFAS 871
            .|.|..|:    ::|      |||.:.|         ||...||.:::......:..:..|..||
  Fly   586 HKTFALKS----YLN------KHLESAC---------LKDEEELMMSMSLSMHDSNSESGASMAS 631

  Fly   872 LRWHKKREHSSVGQAGG 888
            ...|:..|...:..:||
  Fly   632 SPPHEFLERVKLEGSGG 648

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgrNP_001163089.2 MADF_DNA_bdg 335..420 CDD:287510 19/106 (18%)
MADF_DNA_bdg 465..551 CDD:287510 15/102 (15%)
MADF_DNA_bdg 595..682 CDD:287510 13/100 (13%)
C2H2 Zn finger 691..711 CDD:275368 4/19 (21%)
C2H2 Zn finger 719..739 CDD:275368 8/20 (40%)
zf-H2C2_2 731..756 CDD:290200 8/24 (33%)
COG5048 742..>824 CDD:227381 29/81 (36%)
C2H2 Zn finger 747..767 CDD:275368 7/19 (37%)
zf-H2C2_2 763..784 CDD:290200 14/20 (70%)
C2H2 Zn finger 775..795 CDD:275368 7/19 (37%)
C2H2 Zn finger 803..818 CDD:275368 5/14 (36%)
C2H2 Zn finger 831..851 CDD:275368 4/19 (21%)
C2H2 Zn finger 859..877 CDD:275368 4/17 (24%)
scrtNP_001261390.1 zf-C2H2 467..489 CDD:278523 4/21 (19%)
C2H2 Zn finger 469..489 CDD:275370 4/19 (21%)
C2H2 Zn finger 500..520 CDD:275368 8/20 (40%)
COG5048 520..>617 CDD:227381 38/117 (32%)
C2H2 Zn finger 526..546 CDD:275368 7/19 (37%)
zf-H2C2_2 539..562 CDD:290200 13/22 (59%)
C2H2 Zn finger 554..574 CDD:275368 7/19 (37%)
zf-C2H2 554..574 CDD:278523 7/19 (37%)
zf-H2C2_2 566..590 CDD:290200 6/23 (26%)
C2H2 Zn finger 582..599 CDD:275368 7/26 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45457100
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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