DRSC/TRiP Functional Genomics Resources

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Protein Alignment rgr and esg

DIOPT Version :9

Sequence 1:NP_001163089.2 Gene:rgr / 35843 FlyBaseID:FBgn0267792 Length:889 Species:Drosophila melanogaster
Sequence 2:NP_476600.1 Gene:esg / 34903 FlyBaseID:FBgn0001981 Length:470 Species:Drosophila melanogaster


Alignment Length:215 Identity:63/215 - (29%)
Similarity:94/215 - (43%) Gaps:38/215 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   659 RKILTESEDSSSIP----LLHAKLAEFLDQNLGPFR---------CDICSDLVKTCDQYKVHRSA 710
            |.:..||..|||:|    |.|..    |:.||...:         .|:..:.:......|     
  Fly   246 RSMTPESSCSSSLPEDLSLKHKN----LNLNLNTSQPGEQAAAKTGDMSPETMPNASAKK----- 301

  Fly   711 HDGTQP--FICTLCGKGFQMPCNLTVHIRRH---------RRDFPYSCEQCDKRFATSTEVAIHL 764
             |..||  :.|..|.|.:.....||.|.:.|         ::.|  ||:.|||.:.:...:.:|:
  Fly   302 -DKNQPPRYQCPDCQKSYSTFSGLTKHQQFHCPAAEGNQVKKSF--SCKDCDKTYVSLGALKMHI 363

  Fly   765 RTHTGERPYICDLCGKSFKTWSFFDIHRRRHLNQSTFHCPICAKGFYEKNRFTDHMNSHWAIRKH 829
            ||||  .|..|:||||:|........|.|.|..:..|.|..|.:.|.:::....|:.:|..|:|:
  Fly   364 RTHT--LPCKCNLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCHRAFADRSNLRAHLQTHSDIKKY 426

  Fly   830 LCTVCGKTFTTYGNLKKHTE 849
            .||.|.|||:....|.||:|
  Fly   427 SCTSCSKTFSRMSLLTKHSE 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgrNP_001163089.2 MADF_DNA_bdg 335..420 CDD:287510
MADF_DNA_bdg 465..551 CDD:287510
MADF_DNA_bdg 595..682 CDD:287510 9/26 (35%)
C2H2 Zn finger 691..711 CDD:275368 2/19 (11%)
C2H2 Zn finger 719..739 CDD:275368 6/19 (32%)
zf-H2C2_2 731..756 CDD:290200 10/33 (30%)
COG5048 742..>824 CDD:227381 26/81 (32%)
C2H2 Zn finger 747..767 CDD:275368 6/19 (32%)
zf-H2C2_2 763..784 CDD:290200 12/20 (60%)
C2H2 Zn finger 775..795 CDD:275368 8/19 (42%)
C2H2 Zn finger 803..818 CDD:275368 3/14 (21%)
C2H2 Zn finger 831..851 CDD:275368 10/19 (53%)
C2H2 Zn finger 859..877 CDD:275368
esgNP_476600.1 zf-C2H2 309..331 CDD:278523 6/21 (29%)
C2H2 Zn finger 311..331 CDD:275370 6/19 (32%)
zf-C2H2 344..366 CDD:278523 8/23 (35%)
C2H2 Zn finger 346..366 CDD:275368 6/19 (32%)
zf-C2H2 370..392 CDD:278523 8/21 (38%)
C2H2 Zn finger 372..392 CDD:275368 8/19 (42%)
zf-H2C2_2 385..408 CDD:290200 6/22 (27%)
zf-C2H2 398..420 CDD:278523 5/21 (24%)
C2H2 Zn finger 400..420 CDD:275368 4/19 (21%)
C2H2 Zn finger 428..444 CDD:275368 7/15 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45468409
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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