DRSC/TRiP Functional Genomics Resources

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Protein Alignment rgr and Zkscan3

DIOPT Version :9

Sequence 1:NP_001163089.2 Gene:rgr / 35843 FlyBaseID:FBgn0267792 Length:889 Species:Drosophila melanogaster
Sequence 2:NP_001012053.2 Gene:Zkscan3 / 306977 RGDID:1305753 Length:553 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgrNP_001163089.2 MADF_DNA_bdg 335..420 CDD:287510
MADF_DNA_bdg 465..551 CDD:287510
MADF_DNA_bdg 595..682 CDD:287510
C2H2 Zn finger 691..711 CDD:275368
C2H2 Zn finger 719..739 CDD:275368
zf-H2C2_2 731..756 CDD:290200
COG5048 742..>824 CDD:227381
C2H2 Zn finger 747..767 CDD:275368
zf-H2C2_2 763..784 CDD:290200
C2H2 Zn finger 775..795 CDD:275368
C2H2 Zn finger 803..818 CDD:275368
C2H2 Zn finger 831..851 CDD:275368
C2H2 Zn finger 859..877 CDD:275368
Zkscan3NP_001012053.2 SCAN 47..159 CDD:128708
KRAB_A-box 213..271 CDD:413388
zf-C2H2 313..335 CDD:395048
C2H2 Zn finger 315..335 CDD:275368
zf-H2C2_2 328..350 CDD:404364
zf-C2H2 341..363 CDD:395048
C2H2 Zn finger 343..363 CDD:275368
COG5048 <367..514 CDD:227381
C2H2 Zn finger 371..391 CDD:275368
C2H2 Zn finger 399..419 CDD:275368
C2H2 Zn finger 427..447 CDD:275368
C2H2 Zn finger 481..501 CDD:275368
zf-C2H2 507..529 CDD:395048
C2H2 Zn finger 509..529 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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