DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lnpk and Lnpk

DIOPT Version :9

Sequence 1:NP_001286201.1 Gene:Lnpk / 35842 FlyBaseID:FBgn0033309 Length:387 Species:Drosophila melanogaster
Sequence 2:XP_006234439.1 Gene:Lnpk / 362151 RGDID:1312042 Length:425 Species:Rattus norvegicus


Alignment Length:399 Identity:129/399 - (32%)
Similarity:192/399 - (48%) Gaps:69/399 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGFVLSKLRKEKSTEAVLEGLQTQIQALEKYMINTEERKRRFVTNFVGFTIGAYIVGFGLWWYFY 65
            ||.:.|:.|.:.||..|||.:..:|||||::....:..::.:|...:.::...|:....:.:.:|
  Rat     1 MGGLFSRWRAKPSTVEVLENIDKEIQALEEFREKNQRLQKLWVGRLIIYSSILYLFTCLIVYLWY 65

  Fly    66 FPPTMQECFMYLVPLLLFPIVIIFLRRLFTWYFQRKLNKNGDKLTRLKEDKRKILEQVMDKETYK 130
            .|.......:..:|...||::|..||.:..::|.::..:|.:.|..||..|:||||:||:|||||
  Rat    66 LPDEFIARLVMTLPFFAFPLIIWTLRTVLIFFFSKRTERNNEALDDLKSQKKKILEEVMEKETYK 130

  Fly   131 VAVNLLERFG-DKKQLRISGLPTGSTPNRPQVERSPLTVAAVARTSSAGGQQQQ----QRSLAPY 190
            .|..:||||. |.|:.:               |..|.:..|.| |:..|.:.:|    ||:|:|.
  Rat   131 TAKLILERFDPDSKKAK---------------EFEPPSAGAAA-TAKPGQEIRQRTAAQRNLSPA 179

  Fly   191 TSVYRNNNNNQNTSLNSSVISTHSLGQMTSAS-----PQLRAVQELRRRSPFPI----------- 239
            .:     |:||.......|    |.|....||     |:......|.||...|.           
  Rat   180 PA-----NSNQGPPPQVPV----SPGPSKDASAPGGPPERTVAPALPRRLGSPATSVPGMGLHPP 235

  Fly   240 -------VDDRSRSAIDRIVDFIVGDSPKDRFGMICKACHAHNGMLPKEEYEYTTFRCAFCNVLN 297
                   |..|.|.|:||||:::|||.|::|:.:||:.|.:||||..|||:||..||||:|..||
  Rat   236 GPPLARPVLPRERGALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLN 300

  Fly   298 PARKKRPVAPRLSLEAPSDTANKRNDSSESESSDDDSDKEPSARRALLQKLPSGGADM--DATAE 360
            ||||.||.||||    |..:..||.....|.|:..          .||:.:||....:  |:..|
  Rat   301 PARKTRPQAPRL----PEFSFEKRQAVEGSSSTGP----------MLLESVPSPENQLTEDSLEE 351

  Fly   361 TEDLAMETE 369
            .:||...||
  Rat   352 QDDLDNSTE 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LnpkNP_001286201.1 zinc_ribbon_10 247..297 CDD:287076 27/49 (55%)
LnpkXP_006234439.1 DUF2207 <19..117 CDD:303056 21/97 (22%)
HpaP 156..>258 CDD:304665 33/128 (26%)
zinc_ribbon_10 250..300 CDD:287076 28/49 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352181
Domainoid 1 1.000 89 1.000 Domainoid score I7710
eggNOG 1 0.900 - - E1_KOG2846
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H12319
Inparanoid 1 1.050 170 1.000 Inparanoid score I4047
OMA 1 1.010 - - QHG55649
OrthoDB 1 1.010 - - D1595535at2759
OrthoFinder 1 1.000 - - FOG0003331
OrthoInspector 1 1.000 - - oto98471
orthoMCL 1 0.900 - - OOG6_104219
Panther 1 1.100 - - LDO PTHR22166
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3815
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.810

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