DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lnpk and lnp-1

DIOPT Version :9

Sequence 1:NP_001286201.1 Gene:Lnpk / 35842 FlyBaseID:FBgn0033309 Length:387 Species:Drosophila melanogaster
Sequence 2:NP_001348785.1 Gene:lnp-1 / 180731 WormBaseID:WBGene00015492 Length:346 Species:Caenorhabditis elegans


Alignment Length:394 Identity:98/394 - (24%)
Similarity:158/394 - (40%) Gaps:75/394 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGFVLSKLRKEKSTEAVLEGLQTQIQALEKYMINTEERKRRFV------TNFVGFTIGAYIVGFG 59
            ||.:.|: .|..:||            ||:..::.::.|:|..      ||.:.:...:.:|...
 Worm     1 MGNLFSR-NKSPATE------------LERVALSIDDLKKRLQTISSSNTNTLYYYYMSIVVILS 52

  Fly    60 L-----WWYFYFP-PTMQECFMYLVPLLLFPIVIIFL-RRLFTWYFQRKLNKNGDKLTRLKEDKR 117
            :     |..|..| .|...|     .|:|..|.|:.. |.:...:|..:.|:...||......|.
 Worm    53 IAMAHTWLRFEDPQKTYVAC-----ALMLGAIGIVLAGRYVINGFFSWRTNRTTQKLENAISQKT 112

  Fly   118 KILEQVMDKETYKVAVNLLERFGDKKQLRISGLPTGSTPNRPQVERSPLTVAAVARTSSAGGQQQ 182
            .:|:.|.:...:|.|..:|:|: :|.:...:.....||...|    ||:.......:..|..:|:
 Worm   113 TLLDLVKETLKFKEAKEILDRY-EKIEQNTTIDKNDSTLKSP----SPIKKLTADSSMFATPKQE 172

  Fly   183 QQRSLAPYTSVYRNNNNNQNTSLNSSVISTHSLGQMTSASPQLRAVQELRRRSPFPIVDDRSRSA 247
            |:|...|       .....|:::||.        .||....:.|....:|   ||.    |..:|
 Worm   173 QKRVETP-------TAQGPNSAMNSM--------NMTPYHQRNRNAVPIR---PFL----RQTTA 215

  Fly   248 IDRIVDFIVGDSPKDRFGMICKACHAHNGMLPKEEYEYTTFRCAFCNVLNPARK----------- 301
            .||::|:.:.|.|..|..:||..||.||||....||.|.:|||..|..||||:|           
 Worm   216 FDRVLDYFMSDGPNCRNALICSICHTHNGMSTPAEYPYISFRCFECGHLNPAKKMGYIFRPQIPL 280

  Fly   302 -KRPVAPRLSLEAPSDTANKRNDSSESESSDDDSDKEPSARRALLQKLPSGGADMDATAETEDLA 365
             :.|:.|: .::.........|..:..|:....:|..|||.:...:|    |:|.:.....|...
 Worm   281 TRPPMGPK-GIQHNGRVGPSENTHNMMENQKPSTDLTPSASQNGSEK----GSDSENEKVPESKT 340

  Fly   366 METE 369
            ||||
 Worm   341 METE 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LnpkNP_001286201.1 zinc_ribbon_10 247..297 CDD:287076 22/49 (45%)
lnp-1NP_001348785.1 zinc_ribbon_10 215..265 CDD:370800 22/49 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165939
Domainoid 1 1.000 57 1.000 Domainoid score I7295
eggNOG 1 0.900 - - E1_KOG2846
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H12319
Inparanoid 1 1.050 87 1.000 Inparanoid score I3722
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55649
OrthoDB 1 1.010 - - D1595535at2759
OrthoFinder 1 1.000 - - FOG0003331
OrthoInspector 1 1.000 - - oto18141
orthoMCL 1 0.900 - - OOG6_104219
Panther 1 1.100 - - LDO PTHR22166
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R8618
SonicParanoid 1 1.000 - - X3815
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.840

Return to query results.
Submit another query.