DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12780 and XTH16

DIOPT Version :9

Sequence 1:NP_610388.1 Gene:CG12780 / 35834 FlyBaseID:FBgn0033301 Length:100 Species:Drosophila melanogaster
Sequence 2:NP_566738.1 Gene:XTH16 / 821955 AraportID:AT3G23730 Length:291 Species:Arabidopsis thaliana


Alignment Length:86 Identity:18/86 - (20%)
Similarity:29/86 - (33%) Gaps:25/86 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 IDDEPGISLFGFHGRLNEPI-----VDLGNQTWAADIIGKDKDGRWTYTNRDVELKDGDVLYYWT 82
            :|:.| |.:|....:|..|.     :.:.:..|.||               |...:.|.|...|:
plant   159 VDNVP-IRVFNNAEQLGVPFPKNQPMKIYSSLWNAD---------------DWATRGGLVKTDWS 207

  Fly    83 ----TVRYNGRDYHRMNQSAG 99
                |..|.|.:......|:|
plant   208 KAPFTAYYRGFNAAACTVSSG 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12780NP_610388.1 CBM39 6..97 CDD:292510 16/82 (20%)
XTH16NP_566738.1 GH16_XET 24..286 CDD:185685 18/86 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2273
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.