DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mtt and Grm8

DIOPT Version :9

Sequence 1:NP_001260806.1 Gene:mtt / 35832 FlyBaseID:FBgn0050361 Length:1472 Species:Drosophila melanogaster
Sequence 2:NP_071538.1 Gene:Grm8 / 60590 RGDID:619858 Length:908 Species:Rattus norvegicus


Alignment Length:913 Identity:388/913 - (42%)
Similarity:563/913 - (61%) Gaps:81/913 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   391 VEGDVILGGLMMVHSR-EDSITCGPIMPQGGIQALEAMLFTIDRINRE-QLLPNITLGAHILDDC 453
            |:||:|||||..||:: |..:.||.:..:.||..|||||:.||:||:: .||.|||||..|||.|
  Rat    42 VDGDIILGGLFPVHAKGERGVPCGELKKEKGIHRLEAMLYAIDQINKDPDLLSNITLGVRILDTC 106

  Fly   454 DKDSYGLEMAVDFIKGSISNIDDAEYHCNK------TQVRKVISGVVGAASSVTSIQVANLLRLF 512
            .:|:|.||.::.|::..|.. |.::..|..      |:..| ||||:|||:|..||.|||:||||
  Rat   107 SRDTYALEQSLTFVQALIEK-DASDVKCANGDPPIFTKPDK-ISGVIGAAASSVSIMVANILRLF 169

  Fly   513 RIPQVSYFSTSPELSNKQRFEYFSRTIPSDHYQVKAMVEIVKRMGWSYVSIIYEESNY---GIKA 574
            :|||:||.||:||||:..|:::|||.:|.|.||.:|||:||..:||:|||.:..|.||   |::|
  Rat   170 KIPQISYASTAPELSDNTRYDFFSRVVPPDSYQAQAMVDIVTALGWNYVSTLASEGNYGESGVEA 234

  Fly   575 FEELEELLARHNICIAIKEKLVKDSGVAEDIAYDNIVQKLLTKPRARGAIIFGSDQEVRQVMRAV 639
            |.::...:.  .:|||..:|:.::....|   ::.|:::||..|.||..|:|.::.::|:::.|.
  Rat   235 FTQISREIG--GVCIAQSQKIPREPRPGE---FEKIIKRLLETPNARAVIMFANEDDIRRILEAA 294

  Fly   640 RRANATGSFSWIGSDGWSARNLVSDDYEPE--VEGTLSVQPQANPVRGFEEYFLSLTVENNQRNP 702
            ::.|.:|.|.|||||.|.::  ::..|:.|  .||.:::.|:...:.||:.||.|.|:.||:||.
  Rat   295 KKLNQSGHFLWIGSDSWGSK--IAPVYQQEEIAEGAVTILPKRASIDGFDRYFRSRTLANNRRNV 357

  Fly   703 WFVEFWEDHFQCRYPGSTSTPYNNYTKQCTTKERLSRQNT-DFEDQLQFVSDAVMAFAYALRDMH 766
            ||.||||::|.|:. ||.. ..|::.|:||..||::|.:: :.|.::|||.|||.:.||||.:||
  Rat   358 WFAEFWEENFGCKL-GSHG-KRNSHIKKCTGLERIARDSSYEQEGKVQFVIDAVYSMAYALHNMH 420

  Fly   767 RDLCGGGPSLCEAMKPTKGADLLKYLRKVEFEGLSGDEFRFDGNGDGPARYNIIHFK-QSQAGQY 830
            ::.|.|...||..|....|.:||.|:|.|.|.|.:|....|:.|||.|.||:|..:: .:::.:|
  Rat   421 KERCPGYIGLCPRMVTIDGKELLGYIRAVNFNGSAGTPVTFNENGDAPGRYDIFQYQINNKSTEY 485

  Fly   831 ----HWVKVGEYTEGELRLNMTEVKFKRLSPKPPESVCSLPCLVGQAKKYVEGESCCWHCFNCT- 890
                ||.       .:|.|.:.::::.......|.|||||||..|:.||.|:|..|||||..|. 
  Rat   486 KIIGHWT-------NQLHLKVEDMQWANREHTHPASVCSLPCKPGERKKTVKGVPCCWHCERCEG 543

  Fly   891 -TYQIRHPDDETHCKLCKLGTLPDAHKQYCRPIPEIYLRPESAWAIGAMAFSATGILVTLFVMGV 954
             .||:    ||..|:||.|...|:.::..|:.||.|.|...|.||:..:..:..||:.|.||:..
  Rat   544 YNYQV----DELSCELCPLDQRPNINRTGCQRIPIIKLEWHSPWAVVPVFIAILGIIATTFVIVT 604

  Fly   955 FVRHNDTPIVRASGRELSYILLAGIFMCYGVTFALVLKPTNIVCAIQR--FGVGFCFTVVYAALL 1017
            |||:|||||||||||||||:||.|||:||.:||.::..|..|:|:.:|  .|:|.||:  |||||
  Rat   605 FVRYNDTPIVRASGRELSYVLLTGIFLCYSITFLMIAAPDTIICSFRRIFLGLGMCFS--YAALL 667

  Fly  1018 TKTNRIARIFKAGKQSAKRPSFISPKSQLVICACLVSVQILINGVWMVIAPSHAMHHY------- 1075
            ||||||.|||:.||:|...|.||||.|||||...|:|||:|...||.|:.|.|.:..|       
  Rat   668 TKTNRIHRIFEQGKKSVTAPKFISPASQLVITFSLISVQLLGVFVWFVVDPPHTIIDYGEQRTLD 732

  Fly  1076 PTREDNLLVCDSYIDASYMIAFSYPIFLIVICTVYAVLTRKIPEAFNESKHIGFTMYTTCVIWLA 1140
            |.....:|.|| ..|.|.:.:..|.|.|:|.|||||:.||.:||.|||:|.|||||||||:||||
  Rat   733 PENARGVLKCD-ISDLSLICSLGYSILLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIIWLA 796

  Fly  1141 FVPLYFGTANHVP---LRITSMSVTISLSASVTIACLFSPKLYIILIRPERNVRQSMMPPRYGNM 1202
            |:|::||||....   ::.|:::|::||||||::..|:.||:|||:..||:||::          
  Rat   797 FIPIFFGTAQSAEKMYIQTTTLTVSMSLSASVSLGMLYMPKVYIIIFHPEQNVQK---------- 851

  Fly  1203 HRTAGTGPSSMMAAAVVTAATCAQEEKIQKHITPTNTENSLKTKKLCE-MATQTISSIITSLDIN 1266
                    ......||||||| .|.:.|||.....|.|  :|: :||| :.|.|.|:..|.:..:
  Rat   852 --------RKRSFKAVVTAAT-MQSKLIQKGNDRPNGE--VKS-ELCESLETNTSSTKTTYISYS 904

  Fly  1267 AYN 1269
            .::
  Rat   905 NHS 907

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mttNP_001260806.1 Periplasmic_Binding_Protein_Type_1 73..>152 CDD:299141
PBP1_mGluR 393..847 CDD:107357 192/472 (41%)
ANF_receptor 422..820 CDD:279440 172/410 (42%)
NCD3G 861..910 CDD:284890 26/50 (52%)
7tm_3 945..1181 CDD:278433 130/247 (53%)
Grm8NP_071538.1 PBP1_mGluR_groupIII 44..504 CDD:107371 192/477 (40%)
ANF_receptor 74..478 CDD:279440 173/414 (42%)
Glutamate binding. /evidence=ECO:0000250 177..179 0/1 (0%)
NCD3G 514..560 CDD:284890 26/49 (53%)
7tm_3 595..840 CDD:278433 130/247 (53%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 61 1.000 Domainoid score I10177
eggNOG 1 0.900 - - E33208_3B9DN
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H654
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000883
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100392
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X509
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.710

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