DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mtt and grm1a

DIOPT Version :9

Sequence 1:NP_001260806.1 Gene:mtt / 35832 FlyBaseID:FBgn0050361 Length:1472 Species:Drosophila melanogaster
Sequence 2:XP_002665785.3 Gene:grm1a / 555576 ZFINID:ZDB-GENE-030131-7893 Length:1153 Species:Danio rerio


Alignment Length:1073 Identity:389/1073 - (36%)
Similarity:571/1073 - (53%) Gaps:160/1073 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   386 KREAI----------VEGDVILGGLMMVH-----SREDSITCGPIMPQGGIQALEAMLFTIDRIN 435
            ||.|:          ::||||:|.|..||     .|.....||.:..|.|||.:|||..|:||||
Zfish    38 KRSAVQRAAARSVARMDGDVIIGALFSVHHQPSAERVADRKCGDVREQYGIQRVEAMFHTLDRIN 102

  Fly   436 REQ-LLPNITLGAHILDDCDKDSYGLEMAVDFIKGSISNI----DDAEYHCNKT------QVRKV 489
            .:| ||||||||..|.|.|...|..||.:::||:.|:.:|    |.:::..:.|      ..:|.
Zfish   103 ADQNLLPNITLGCEIRDSCWHSSVALEQSIEFIRDSLISIRDDKDGSKWCIDGTPSNQPPPSKKP 167

  Fly   490 ISGVVGAASSVTSIQVANLLRLFRIPQVSYFSTSPELSNKQRFEYFSRTIPSDHYQVKAMVEIVK 554
            |:||:|..||..:|||.|||:||.|||::|.:||.:||:|..|:||.|.:|||..|.:||::|||
Zfish   168 IAGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLFKYFLRVVPSDTLQARAMLDIVK 232

  Fly   555 RMGWSYVSIIYEESNYGIKAFEELEELLARHNICIAIKEKLVKDSGVAEDIAYDNIVQKLLTK-P 618
            ...|:|||.::.|.|||....|..:||.|...:|||..:|:..::|   :..:|.:::||..: |
Zfish   233 HYNWTYVSAVHTEGNYGESGMEAFKELAAEEGLCIAHSDKIYSNAG---EKHFDRLLKKLRERLP 294

  Fly   619 RARGAIIFGSDQEVRQVMRAVRRANATGSFSWIGSDGWSARNLVSDDYEPEVEGTLSVQPQANPV 683
            :||..:.|.....||.::.|:||...:|.|..||||||:.|:.|.:.||.|.:|.::::.|...|
Zfish   295 KARVVVCFCEGMTVRSLLMAMRRRGVSGEFQLIGSDGWADRDEVVEGYEQEADGGITMKLQTEEV 359

  Fly   684 RGFEEYFLSLTVENNQRNPWFVEFWEDHFQCRYPGSTSTPYNNYTKQCTTKERLSRQNTDFEDQL 748
            :.|.:|||.|.::.|:|||||.|||:..||||.||.....: ||.|.||..|.| :.|...:.::
Zfish   360 QSFNDYFLKLRLDTNKRNPWFAEFWQYRFQCRIPGHPQENH-NYQKICTGNESL-KDNYVQDSKM 422

  Fly   749 QFVSDAVMAFAYALRDMHRDLCGGGPSLCEAMKPTKGADLLKYLRKVEFEGLSGDEFRFDGNGDG 813
            .||.:|:.|.|:.|.||||::|.....|||||.|..|:.||.||.|..|.|:||:|..||.|||.
Zfish   423 GFVINAIYAMAHGLHDMHREMCPEHSGLCEAMDPIDGSKLLDYLLKTSFSGVSGEEIYFDVNGDS 487

  Fly   814 PARYNIIHFKQ-SQAGQYHWVKVGEYTEGELRLNMTEVKFKRLSPKPPESVCSLPCLVGQAKKYV 877
            |.||:|::.:. .:.|::.::.||.:.||  .|::::.|......:...||||.||..||.|...
Zfish   488 PGRYDIMNLQYVEEIGRFDYINVGSWHEG--LLSISDYKLMTNRTEMVRSVCSEPCSKGQIKVIR 550

  Fly   878 EGE-SCCWHCFNCTTYQIRHPDDETHCKLCKLGTLPDAHKQYCRPIPEIYLRPESAWAIGAMAFS 941
            :|| ||||.|..|...:  :..||..|:.|.||..||.....|:|:|..||...|..:|.|:.||
Zfish   551 KGEVSCCWICTTCKDNE--YVQDEFTCRACDLGWWPDDELAECKPLPLKYLEWGSVESIIAVVFS 613

  Fly   942 ATGILVTLFVMGVFVRHNDTPIVRASGRELSYILLAGIFMCYGVTFALVLKPTNIVCAIQRFGVG 1006
            ..||||||||..:|.:::|||:|::|.|||.||:|||||:.|...|.|:.:||.|.|.:||..||
Zfish   614 CVGILVTLFVTFIFFQYSDTPVVKSSSRELCYIILAGIFLGYICPFTLIARPTVISCYLQRILVG 678

  Fly  1007 FCFTVVYAALLTKTNRIARIFKAGKQS--AKRPSFISPKSQLVICACLVSVQILINGVWMVIAPS 1069
            ....:.|:||:|||||||||....|:.  .::|.|:|..:|:||...|:|:|:.:....||:.|.
Zfish   679 LSSAMCYSALVTKTNRIARILAGSKKKICTRKPRFMSAWAQVVIAFMLISLQLAVVVTLMVLEPP 743

  Fly  1070 HAMHHYPTREDNLLVCDSYIDASYMIAFSYPIFLIVICTVYAVLTRKIPEAFNESKHIGFTMYTT 1134
            ..:..||:..:..|:|:: .:...:....|...||:.||.||..||.:|..|||:|:|.||||||
Zfish   744 EPVKSYPSIREVYLICNT-SNVGVVAPLGYNGLLIMSCTYYAFKTRNVPANFNEAKYIAFTMYTT 807

  Fly  1135 CVIWLAFVPLYFGTANHVPLRITSMSVTISLSASVTIACLFSPKLYIILIRPERNVRQSMMPPRY 1199
            |:|||||||:||| :|:   :|.:.|.::|||.:|.:.|:|:||:|||:.:||||||.:......
Zfish   808 CIIWLAFVPIYFG-SNY---KIITTSFSVSLSVTVALGCMFTPKMYIIIAKPERNVRSAFTTSDV 868

  Fly  1200 GNMHRTAGTG-PSSMMAAAVVTAATCAQEEKIQKHITPTNTENSLKTKKLCEMATQTISSIITSL 1263
            ..||  .|.| |:...:.:::                     |..:.||                
Zfish   869 VRMH--VGDGKPAPCQSNSIL---------------------NMFRRKK---------------- 894

  Fly  1264 DINAYNQIPYADQYVPNNATTATTTPTDKGSGNGNSNSNSNTNGSSNSNSNSNGDGDVATEQVVA 1328
                                           .|.|:..::|.||.|.|.|.|..           
Zfish   895 -------------------------------NNNNATGSTNPNGKSVSWSESGA----------- 917

  Fly  1329 NNNKINQRQHGQPAVAFAITSTNNHISGPAATITTTAATGETTTEALVATITT---PLATVDGSE 1390
                   |..|:.:..|...|.  |:        ...|.|::.| |::..:|.   |..:..|: 
Zfish   918 -------RPQGRGSSVFHRLSV--HV--------RRQAVGQSQT-AVIRPLTNASQPPESEYGA- 963

  Fly  1391 TMSVAPNNGH-----------GNNGSQRPPVLQ 1412
            .::.|||..|           |::|..:.|..|
Zfish   964 GLNTAPNGSHPDDKDLYNLGEGHDGGPQHPTAQ 996

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mttNP_001260806.1 Periplasmic_Binding_Protein_Type_1 73..>152 CDD:299141
PBP1_mGluR 393..847 CDD:107357 197/471 (42%)
ANF_receptor 422..820 CDD:279440 176/409 (43%)
NCD3G 861..910 CDD:284890 22/49 (45%)
7tm_3 945..1181 CDD:278433 106/237 (45%)
grm1aXP_002665785.3 PBP1_mGluR_groupI 48..523 CDD:107369 197/481 (41%)
ANF_receptor 89..497 CDD:279440 177/412 (43%)
NCD3G 534..583 CDD:284890 23/50 (46%)
7tm_3 617..850 CDD:278433 106/237 (45%)
GluR_Homer-bdg 1110..1153 CDD:287563
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3B9DN
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100392
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.710

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