DRSC/TRiP Functional Genomics Resources

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Protein Alignment mtt and Vom2r47

DIOPT Version :10

Sequence 1:NP_001260806.1 Gene:mtt / 35832 FlyBaseID:FBgn0050361 Length:1472 Species:Drosophila melanogaster
Sequence 2:XP_006232524.2 Gene:Vom2r47 / 365807 RGDID:1559813 Length:908 Species:Rattus norvegicus


Alignment Length:896 Identity:237/896 - (26%)
Similarity:407/896 - (45%) Gaps:112/896 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   395 VILGGLMMVHSR----------EDSITCGPIMPQG----GIQALEAMLFTIDRIN-REQLLPNIT 444
            :::|||..||.|          .:|..|     :|    |.:.::.|:.||..|| |:.:|||.|
  Rat    50 MVIGGLFPVHYRTIPKIDPDEEPESAMC-----EGFNFRGFRWMKTMIHTIKEINERKDILPNHT 109

  Fly   445 LGAHILDDCDKDSYGLEMAVDFIKGSISNIDDAEYHCN-KTQVRKVISGVVGAASSVTSIQVANL 508
            ||..|.|.|...|..:|....|:.|      ..||..| :....|.::|::|:..|..|:..:.:
  Rat   110 LGYQIFDTCFSISKTVESTFVFLTG------QEEYKPNFRNSSGKYLAGIIGSGGSSLSVASSRI 168

  Fly   509 LRLFRIPQVSYFSTSPELSNKQRFEYFSRTIPSDHYQVKAMVEIVKRMGWSYVSIIYEESNYGIK 573
            |.::.:.||.|.|:|..||:..||..|.||||||..|.:|||.::|..||.:|..|..:.:||..
  Rat   169 LEVYYMSQVGYTSSSSILSDHFRFPTFYRTIPSDKIQTEAMVNLIKHFGWVWVGAIAADDDYGKY 233

  Fly   574 AFEELEELLARHNICIAIKEKLVKDSGVAEDIAYDN-IVQKLLTKPR---ARGAIIFGSDQEVRQ 634
            ..:..:|.|.|.|:|:|..|.:.|        .|.| .:||.:...:   |:..:::.:|.::|.
  Rat   234 GIKSFKEKLERSNLCVAFSETIPK--------VYSNEKMQKAINAVKSSTAKVVVLYATDIDLRP 290

  Fly   635 VMRAVRRANATGSFSWIGSDGWSARNLVS-DDYEPEVEGTLSVQPQANPVRGFEEYFLSLTVENN 698
            .:..|...|.|.. :||.|:.|....|:: .:|.|...||:......:.:.|.:|:...:....:
  Rat   291 FVLEVVHHNITDR-TWIASEAWITSALIAKPEYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKD 354

  Fly   699 QRNPWFVEFWEDHFQCRYPGSTSTPYN-----NYT-----------KQCTTKERLSRQNTDFEDQ 747
            ..:...:|||:..|.|.:|.| |.|||     |.|           :.||.:|:|......:.|.
  Rat   355 PNDVLTIEFWQTAFNCTWPNS-SVPYNVDYRGNMTGKEDRFYAMSDRLCTGEEKLEDLKNTYLDT 418

  Fly   748 LQF-----VSDAVMAFAYALRDMHRDLCGGGPSLCEAMKPTKGA---------DLLKYLRKVEFE 798
            .|.     |..||...|:||..:.|         |:..:|....         :|:.|:.::||.
  Rat   419 SQLRITNNVKQAVYLLAHALDRLSR---------CDVPQPDVKCSQIPNFDPFELMIYIMRMEFT 474

  Fly   799 GLSGDEFRFDGNGD-GPARYNIIHFKQSQAGQYHWVKVGEY----TEGELRLNMTEVKF-KRLSP 857
            ...|.:...|.:|| ....|:|::::...||:..:||.|||    ::.||.|:.....| ...|.
  Rat   475 THDGRKIELDRSGDVKNGYYDILNWQMDDAGEIAFVKFGEYKFTSSKYELVLSKNSTLFWNTESS 539

  Fly   858 KPPESVCSLPCLVGQAKKYVEGE-SCCWHCFNCTTYQIRHPDDETHCKLCKLGTLPDAHKQYCRP 921
            :.|:|.|:..|..|..|...:|: :||:.|..|....:.....:..|..|......:|.|..|.|
  Rat   540 ELPDSFCTKLCPPGTRKGIRQGKPTCCFDCIPCADGYVSEKPGQRECDPCSEDDWSNAEKSKCVP 604

  Fly   922 IPEIYLRPESAWAIGAMAFSATGILVTLFVMGVFVRHNDTPIVRASGRELSYILLAGIFMCYGVT 986
            ....:|..|.|.....:..|..|.||.:.|..|:|.|..||:|:|:.||||:.:...:.:....:
  Rat   605 KLVEFLSYEEALGFTLVILSIFGALVVMAVTVVYVIHRHTPLVKANDRELSFFIQMSLVITVLSS 669

  Fly   987 FALVLKPTNIVCAIQR--FGVGFCFTVVYAALLTKTNRIARIFKAGKQSAKRPSFISPKSQLVIC 1049
            ...:.||.|..|..::  ..:|||..:  :::|.||..:...::..|...:..|......:|::.
  Rat   670 MLFIGKPCNWSCMARQVTLALGFCLCL--SSILGKTISLFFAYRISKSKTRLISMHPIFRKLIVL 732

  Fly  1050 ACLVSVQILINGVWMVIAPSHAMHHY-PTREDNLLVC-DSYIDASYMIAFSYPIFLIVICTVYAV 1112
            .|:|. :|.:...::|:.|.....:. |.....:..| :..|:..|.| |.:.:.|.::|.:...
  Rat   733 ICVVG-EIGVCTAYLVLEPPRMFKNIEPQNVKIIFECNEGSIEFLYSI-FGFNVLLALLCFLTTF 795

  Fly  1113 LTRKIPEAFNESKHIGFTMYTTCVIWLAFVPLYFGTANHVPLRITSMSVTISLSASV-TIACLFS 1176
            :.|::|:.:.|.|.|.|.|....::|::|||.|..|.....:.:...::   |::|. .:.|:|.
  Rat   796 VARQLPDNYYEGKCITFGMLVFFIVWISFVPAYLSTKGKFKVAVEIFAI---LASSYGLLGCVFL 857

  Fly  1177 PKLYIILIRPERNVRQSMMPPRYGNMHRTAGTGPSSMMAAAVVTAATCAQE 1227
            ||.:|||:||:||..:            |.|....::..:..:|:|:.:.|
  Rat   858 PKCFIILLRPKRNTDE------------TVGGRVPTLDKSIQLTSASVSSE 896

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mttNP_001260806.1 Periplasmic_Binding_Protein_type1 73..>157 CDD:471960
PBP1_mGluR 393..848 CDD:380585 142/508 (28%)
NCD3G 860..912 CDD:462210 13/52 (25%)
7tmC_mGluRs 932..1184 CDD:320173 64/256 (25%)
TM helix 1 932..957 CDD:320173 7/24 (29%)
TM helix 2 969..990 CDD:320173 4/20 (20%)
TM helix 3 999..1023 CDD:320173 6/25 (24%)
TM helix 4 1045..1065 CDD:320173 4/19 (21%)
TM helix 5 1089..1115 CDD:320173 6/25 (24%)
TM helix 6 1123..1146 CDD:320173 9/22 (41%)
TM helix 7 1153..1178 CDD:320173 4/25 (16%)
Vom2r47XP_006232524.2 PBP1_CaSR 51..534 CDD:380587 142/512 (28%)
NCD3G 542..595 CDD:462210 13/52 (25%)
7tmC_V2R-like 615..867 CDD:320407 65/258 (25%)
TM helix 1 615..640 CDD:320407 7/24 (29%)
TM helix 2 652..673 CDD:320407 4/20 (20%)
TM helix 3 682..706 CDD:320407 6/25 (24%)
TM helix 4 729..745 CDD:320407 4/16 (25%)
TM helix 5 772..798 CDD:320407 6/26 (23%)
TM helix 6 806..829 CDD:320407 9/22 (41%)
TM helix 7 834..859 CDD:320407 4/27 (15%)
Blue background indicates that the domain is not in the aligned region.

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