DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cyp4ad1 and Cyp26a1

DIOPT Version :9

Sequence 1:NP_610380.1 Gene:Cyp4ad1 / 35821 FlyBaseID:FBgn0033292 Length:516 Species:Drosophila melanogaster
Sequence 2:NP_569092.2 Gene:Cyp26a1 / 154985 RGDID:620161 Length:497 Species:Rattus norvegicus


Alignment Length:479 Identity:113/479 - (23%)
Similarity:203/479 - (42%) Gaps:82/479 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 PGPTPYPFVGNLFQFGLKPAEYPKKVLQY-CRKYDFQGFRSLVFLQYHMMLSDPAEIQNILSSSS 99
            ||...:||.|...|..|:    .:|.||. .|||.|. :::.:|.:..:.:.....::.||....
  Rat    46 PGTMGFPFFGETLQMVLQ----RRKFLQMKRRKYGFI-YKTHLFGRPTVRVMGADNVRRILLGEH 105

  Fly   100 LLYKEHLYSFLRPWLGDGLLTS-SGARWLKHQKLYAPAFERSAIEGYLRVV-HRTGGQFVQKLDV 162
            .|...|..:.:|..||.|.|:: ..:...:.:|:...||.|.|::.|:.|: ....|...|.|..
  Rat   106 RLVSVHWPASVRTILGAGCLSNLHDSSHKQRKKVIMQAFNREALQCYVPVIAEEVSGCLEQWLSC 170

  Fly   163 LSDTQEVF-DAQELVAKCTLDIV--CENAT---GQDSSSLNGETSDLHGAIKDLCDVVQERT--- 218
            ......|: :.:.|:.:..:.|:  ||...   |:|.              :.|.:..:|.|   
  Rat   171 GERGLLVYPEVKRLMFRIAMRILLGCEPGPAGGGEDE--------------QQLVEAFEEMTRNL 221

  Fly   219 FS--IVKRFDALFR-LTSYYMKQRRALSLLRSELNRIISQRRH-------QLAAENTCQQGQPIN 273
            ||  |...|..|:| :.:..:...|....:|:::.|:.:....       ||..|::.::|:   
  Rat   222 FSLPIDVPFSGLYRGVKARNLIHARIEENIRAKIRRLQAAEPDAGCKDALQLLIEHSWERGE--- 283

  Fly   274 KPFLDVLLTAKLDGKVLKEREIIEEVSTFIFTGHDPIAAAISFTLYTLSRHSEIQQKAAEEQRR- 337
                      :||.:.||:..     :..:|.||:..|:|.:..:..|..:..:.||..||.:. 
  Rat   284 ----------RLDMQALKQSS-----TELLFGGHETTASAATSLITYLGLYPHVLQKVREEIKSK 333

  Fly   338 --IFGENFAGEADLARLDQMHYLELIIRETLRLYPSVPLIARTNRNPIDINGTKVAKCTTVIMCL 400
              :...:...:.|:..|:|:.|:..:|:|||||.|.||...|......::||.::.|...||..:
  Rat   334 GLLCKSHHEDKLDMETLEQLKYIGCVIKETLRLNPPVPGGFRVALKTFELNGYQIPKGWNVIYSI 398

  Fly   401 -----IAMGYNEKYFDDPCTFRPERFE--NPTGNVGIEAFKSVPFSAGPRRCIAEKFAMYQMKAL 458
                 :|..:..|.     .|.|:||.  :|...   ..|..:||..|.|.|:.::||...:|..
  Rat   399 CDTHDVADSFTNKE-----EFNPDRFTSLHPEDT---SRFSFIPFGGGLRSCVGKEFAKILLKIF 455

  Fly   459 LSQLLRR--FEIL---PAVDGLPP 477
            ..:|.||  :::|   |.:...||
  Rat   456 TVELARRCDWQLLNGPPTMKTSPP 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyp4ad1NP_610380.1 p450 36..470 CDD:278495 110/470 (23%)
Cyp26a1NP_569092.2 p450 43..491 CDD:299894 113/479 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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