DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcp4 and Edg78E

DIOPT Version :9

Sequence 1:NP_001260804.1 Gene:Lcp4 / 35820 FlyBaseID:FBgn0002535 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_001287140.1 Gene:Edg78E / 40354 FlyBaseID:FBgn0000551 Length:122 Species:Drosophila melanogaster


Alignment Length:114 Identity:44/114 - (38%)
Similarity:64/114 - (56%) Gaps:6/114 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFKILLVCALVALVAA---NENPEVKELVND-VQADG-FVSKLVLDNGSAASATGDVHGNIDGVF 60
            |:|.|...||:....|   |::.:::...|| ..|:| :.......||......|:.:| ..|..
  Fly     1 MYKYLFCLALIGCACADNINKDAQIRSFQNDATDAEGNYQYAYETSNGIQIQEAGNANG-ARGAV 64

  Fly    61 EWVSPEGEHVRVSYKADENGYQPQSDLLPTPPPIPEAILKAIAYIQAHP 109
            .:|||||||:.::|.|||.||.|..|.||||||:|..:|:|:.||:.||
  Fly    65 AYVSPEGEHISLTYTADEEGYHPVGDHLPTPPPVPAYVLRALEYIRTHP 113

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcp4NP_001260804.1 Chitin_bind_4 40..81 CDD:278791 16/40 (40%)
Edg78ENP_001287140.1 Chitin_bind_4 39..85 CDD:395303 16/46 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45470202
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1459720at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10380
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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