DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcp3 and Cpr49Af

DIOPT Version :9

Sequence 1:NP_001260803.1 Gene:Lcp3 / 35819 FlyBaseID:FBgn0002534 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_001286347.1 Gene:Cpr49Af / 36352 FlyBaseID:FBgn0033729 Length:126 Species:Drosophila melanogaster


Alignment Length:128 Identity:47/128 - (36%)
Similarity:65/128 - (50%) Gaps:28/128 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KILLVCSLAALVAANA-----------NVEVK-------ELVNDVQPDGFVSKLVLDDGSASSAT 49
            |.|::.:| .:|||:|           |||..       ||     .||  || ...||...|..
  Fly     2 KYLMLIAL-FVVAASATDNDDPISQESNVEYNGKYHYHYEL-----KDG--SK-ATQDGVLKSVN 57

  Fly    50 GDIHG-NIDGVFEWISPEGVHVRVSYKADENGYQPQSDLLPTPPPIPAAILKAIAYIEANPSK 111
            .|.:| :::|.:.:::.:|....|||.||||||....|.||||||.|.::|||:.||..:|.|
  Fly    58 ADHNGESVNGKYSFVADDGKTYVVSYTADENGYLAVGDHLPTPPPTPVSVLKALEYIRLHPYK 120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcp3NP_001260803.1 Chitin_bind_4 40..81 CDD:278791 14/41 (34%)
Cpr49AfNP_001286347.1 Chitin_bind_4 35..90 CDD:278791 20/62 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1459720at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10380
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
33.020

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