DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lcp1 and CG15754

DIOPT Version :9

Sequence 1:NP_001260801.1 Gene:Lcp1 / 35817 FlyBaseID:FBgn0002531 Length:130 Species:Drosophila melanogaster
Sequence 2:NP_572894.1 Gene:CG15754 / 32307 FlyBaseID:FBgn0030492 Length:281 Species:Drosophila melanogaster


Alignment Length:118 Identity:32/118 - (27%)
Similarity:51/118 - (43%) Gaps:24/118 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 PPVPHSLGRSEDV-HADVLSQSDDVRA--DGF-----DSS----LHTSNGIEQAASG----DAHG 66
            |.:|...|..|:: ...|..:.:|..|  |.|     |.|    ....:||.:...|    :.||
  Fly   158 PALPQPGGVLEELAGGQVDEELEDYNAWRDNFYELNEDGSYIFGYSIPHGIRRWEKGYYSEEQHG 222

  Fly    67 NIHGNFGWISP----EGEHVEVK-YVANENGYQPSGA-WIPTPPPI-PEAIAR 112
            .:...| ::.|    :|...|:: |.|:..||||... ::.|||.: .:||.|
  Fly   223 RVVEGF-YVQPRHDSQGLRYELRCYRADSEGYQPRPVEFLRTPPIVRRDAIPR 274

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcp1NP_001260801.1 Chitin_bind_4 46..93 CDD:278791 14/64 (22%)
CG15754NP_572894.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.