Protein Alignment pdm3 and Pou6f2

DIOPT Version :10

• Sequence 1: NP_001188885.2
• Gene: pdm3 / 35813
• FlyBaseID: FBgn0261588
• Length: 1292
• Species: Drosophila melanogaster
• Sequence 2: XP_063132809.1
• Gene: Pou6f2 / 681092
• -ID: -
• Length: 721
• Species: Rattus norvegicus
• Alignment Length: 950
• Identity: 285/950 - (30%)
• Similarity: 377/950 - (39%)
• Gaps: 348/950 - (36%)

  Fly   435 HPHHGHQHHH---------HHPATAAALASLQGLAASVFNSPL-------NLSVGGEPVATTG-- 481
            :||...|.||         ....|..|:.....:.|...:.||       |..:.||..|.|.
  Rat     5 NPHSPFQRHHMTDCDLPAQQDTGTMQAVIGQDPMIAGQVSKPLLSVRSEMNAELRGEDKAATSDS 69

  Fly   482 ----PSVAPTSPTHNGGKSKTAK-GGSSGNGSGGSSANSGTSSAQQQQQPDNPSSSSSPHHPLSA 541
                |.:||..  .|..:...:| .|:.||   ......||.. |.|....:||....|...|:|
  Rat    70 ELNEPLLAPVE--SNDSEDTPSKLFGARGN---TVLPEPGTPD-QHQASQTHPSFPVGPQPLLTA 128

  Fly   542 SSLANVLAAATASPPPSLQAPPASAQMPQLIL----ASGQLVQGVQGAQLLIPTA-----QGI-- 595
            ..||:.:|......||:|..|         ||    .:||| .|.||..|.:|||     ||:
  Rat   129 QQLASAVAGVMPGGPPALNQP---------ILIPFNMAGQL-GGQQGLVLTLPTANLTNIQGLVA 183

  Fly   596 --AVQTILTIPVSPQIPTTEQFLPNAFGAFASYQQQQQQQQQQRDLLPPSLAALQHATALPQLAQ 658
              |...|:|:|:.....|:.  |.:........|.||||||||    ||.....||    ||
  Rat   184 AAAAGGIMTLPLQNLQATSS--LNSQLQQLQQLQLQQQQQQQQ----PPPPPTSQH----PQ--- 235

  Fly   659 TPTNLLKPNLFSTGVQQLLTALHPELFAAAAATHQQQQQQQQQQVQQQRERERERERERERERER 723
                                       .|:.|..|.||.|.|
  Rat   236 ---------------------------PASQAPAQSQQPQSQ----------------------- 250

  Fly   724 EREQHLGIGHLPHSHLAADLRRSAERSPTAGSPTGGSPGLAAKGPQPPPPGAAFLLQQQLHIKP- 787
                                       ||.              |..|||.:     |||...|
  Rat   251 ---------------------------PTP--------------PHQPPPAS-----QQLPAAPA 269

  Fly   788 ------ETQTHL-HHHLQTQSTSAVSSTLPQISLRHPDELTAPQMDLKPLELSASTSPPAPPPRH 845
                  :.|.|. |.|.|.|:.|:.:                          ..|:|||..|...
  Rat   270 QLPQATQPQQHQPHSHPQNQNQSSPT--------------------------QQSSSPPQKPTPS 308

  Fly   846 HFGHSLRGSSTVSPKHSPQGRMGGSGGSTTTGMNLSQHHERHDRLERLERQERHERRSHTPTATA 910
            ..||||  .|.::|.:..|                               ...:...|....|.|
  Rat   309 PGGHSL--PSPLTPPNPLQ-------------------------------LVNNPLASQAAAAAA 340

  Fly   911 TRASVSSSSSAGHHGGSLP--SGRLSP-------------PSSAPSNSAANSISDRGYTSPLFRT 960
            ...|::||.:.|:...||.  :|:|..             |:..||:.||:..... ...|:
  Rat   341 AMGSIASSQAFGNALSSLQGVTGQLVTNAQGQIIGTIPLMPNPGPSSQAASGTQGL-QVQPI--- 401

  Fly   961 HSPQGHALSLGGSPRLERDYLGNG--PSSGTATSTSSCGAP---------TAAGSSATANVLSSI 1014
             :||   |......::....:||.  |...|...|.|...|         |:.|.:.|..
  Rat   402 -TPQ---LLTNAQGQIIATVIGNQILPVINTQGITLSPIKPGQQLHQSSQTSVGQAGTQG----- 457

  Fly  1015 NRLNASNGELTITKSLGAPTATATRASSASPRDDSPGPGPSTSSVSHMQPLKLSPSSRSEPPHLS 1079
            |.|:.::|:.:.::|   |...|:.:||:|         .|:|::|..|
  Rat   458 NLLHLAHGQASTSQS---PVRQASSSSSSS---------SSSSALSVGQ---------------- 494

  Fly  1080 PNGNDNDNDLLMDSPNEPTINQATTNVVDGIDLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTE 1144
                      |:.:|      |.....|||::|:||:|||||||:|||||||||||||||||.||
  Rat   495 ----------LVSNP------QTAAGEVDGVNLEEIREFAKAFKIRRLSLGLTQTQVGQALSATE 543

  Fly  1145 GPAYSQSAIC--------------------SSALAAQ-----MYAAQLSTQQQNMFEKLDITPKS 1184
            ||||||||||                    :|:|.|:     :|.|:        ||||||||||
  Rat   544 GPAYSQSAICRHTILRSHFFLPQEAQENTIASSLTAKLNPGLLYPAR--------FEKLDITPKS 600

  Fly  1185 AQKIKPVLERWMKEAEESHWNRYKSGQNHLTDYIGVEPSKKRKRRTSFTPQALELLNAHFERNTH 1249
            ||||||||||||.|||.    |:::|..:||::||.||||||||||||||||||:||||||:|||
  Rat   601 AQKIKPVLERWMAEAEA----RHRAGMQNLTEFIGSEPSKKRKRRTSFTPQALEILNAHFEKNTH 661

  Fly  1250 PSGTEITGLAHQLGYEREVIRIWFCNKRQALKNTVRMMSK 1289
            |||.|:|.:|.:|.|:|||:|:||||||||||||::.:.:
  Rat   662 PSGQEMTEIAEKLNYDREVVRVWFCNKRQALKNTIKRLKQ 701

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pdm3	NP_001188885.2	Pou	1108..1200	CDD:473999	69/116 (59%)
		Homeodomain	1226..1282	CDD:459649	43/55 (78%)
Pou6f2	XP_063132809.1	None