DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm3 and POU4F1

DIOPT Version :9

Sequence 1:NP_001188885.2 Gene:pdm3 / 35813 FlyBaseID:FBgn0261588 Length:1292 Species:Drosophila melanogaster
Sequence 2:NP_006228.3 Gene:POU4F1 / 5457 HGNCID:9218 Length:419 Species:Homo sapiens


Alignment Length:534 Identity:118/534 - (22%)
Similarity:178/534 - (33%) Gaps:162/534 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   780 QQQLHIKPETQTHLHHHLQTQSTSAVSSTLPQISLRH------PDELTAPQMDLKPLELSAS--- 835
            |....:.|....|.:..|.:.|.:...:.||...|:.      .:.|.|....|..::::.|   
Human     8 QPHFAMHPTLPEHKYPSLHSSSEAIRRACLPTPPLQSNLFASLDETLLARAEALAAVDIAVSQGK 72

  Fly   836 TSPPAPPPRHHFGHSLRGSSTVSPKHSPQGRMGGSGGSTTTGMNLSQHHERHDRLERLERQERHE 900
            :.|..|...:|..:|:..:||                ||....:...||..|..||..:..:...
Human    73 SHPFKPDATYHTMNSVPCTST----------------STVPLAHHHHHHHHHQALEPGDLLDHIS 121

  Fly   901 RRSHTPTATATRASVSSSSSAGHHGGSLPSGRLSP-----PSSAPSNSAANSISDRGYTSPLFRT 960
            ..|....|.|..|..::.....|.|   |.|...|     |...|...........|        
Human   122 SPSLALMAGAGGAGAAAGGGGAHDG---PGGGGGPGGGGGPGGGPGGGGGGGPGGGG-------- 175

  Fly   961 HSPQGHALSLGGSPRLERDYLG-----------NGPSS----GTATSTSSCGAPTAAGSSATANV 1010
            ..|.|..|.....|......||           |.||.    |...:.:..||..||.::|...|
Human   176 GGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQV 240

  Fly  1011 LSSINRLNASNGELTITKSLGAPTATATRASSASPRDDSPGPGPSTSSVSHMQPLKLSPSSRSEP 1075
            .::                 .|..|....|..||                               
Human   241 AAA-----------------SAAAAVVGAAGLAS------------------------------- 257

  Fly  1076 PHLSPNGNDNDNDLLMDSPNEPTINQATTNVVDGIDLDEIKEFAKAFKLRRLSLGLTQTQVGQAL 1140
                          :.||..:|.               |::.||:.||.||:.||:||..||.||
Human   258 --------------ICDSDTDPR---------------ELEAFAERFKQRRIKLGVTQADVGSAL 293

  Fly  1141 SVTEGP---AYSQSAICSSALAAQMYAAQLSTQQQNMFEKLDITPKSAQKIKPVLERWMKEAEES 1202
            :..:.|   :.|||.||                   .||.|.::..:...:||:|:.|::|||.:
Human   294 ANLKIPGVGSLSQSTIC-------------------RFESLTLSHNNMIALKPILQAWLEEAEGA 339

  Fly  1203 HWNRYKSGQNHLTDYIGVEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYERE 1267
              .|.|..:..|  :.|.|   |:::|||........|.|:|.....||..:|..:|.:|..::.
Human   340 --QREKMNKPEL--FNGGE---KKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKN 397

  Fly  1268 VIRIWFCNKRQALK 1281
            |:|:||||:||..|
Human   398 VVRVWFCNQRQKQK 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm3NP_001188885.2 Pou 1108..1200 CDD:304656 29/94 (31%)
Homeobox 1228..1281 CDD:278475 19/52 (37%)
POU4F1NP_006228.3 POU-IV box 57..66 1/8 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 94..117 7/22 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 131..197 14/76 (18%)
POU 260..337 CDD:197673 32/110 (29%)
Homeobox 358..411 CDD:278475 19/52 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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