DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm3 and Pou4f3

DIOPT Version :10

Sequence 1:NP_001188885.2 Gene:pdm3 / 35813 FlyBaseID:FBgn0261588 Length:1292 Species:Drosophila melanogaster
Sequence 2:NP_001102359.1 Gene:Pou4f3 / 364855 RGDID:1310459 Length:338 Species:Rattus norvegicus


Alignment Length:333 Identity:85/333 - (25%)
Similarity:145/333 - (43%) Gaps:64/333 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   973 SPRLERDYLGNGPSSGTATSTS-------SCGAPTAAGSSATANVLSSINRLNASNGELTITKSL 1030
            :|:|:.:..|:...|..|.:.:       |.|........||.:.:||:...:.|          
  Rat    38 APQLQGNIFGSFDESLLARAEALAAVDIVSHGKNHPFKPDATYHTMSSVPCTSTS---------- 92

  Fly  1031 GAPTATATRASSASPRDDSP-GPGPSTSSVSHMQPLKLSPS-----------SRSEPPHLSPNGN 1083
              ||...:..::.:.....| ..|.....:.|:.| .||.|           ::..|.||...|:
  Rat    93 --PTVPISHPAALTSHPHHPVHQGLEGDLLEHISP-TLSVSGLGAPEHSVMPAQIHPHHLGAMGH 154

  Fly  1084 DNDNDLLMDSPNEPTINQATTNVVDGIDLD--EIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGP 1146
            .: ..:.|..|:....:.|....:..::.|  |::.||:.||.||:.||:||..||.||:..:.|
  Rat   155 LH-QAMGMSHPHAVAPHSAMPACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIP 218

  Fly  1147 ---AYSQSAICSSALAAQMYAAQLSTQQQNMFEKLDITPKSAQKIKPVLERWMKEAEESHWNRYK 1208
               :.|||.||                   .||.|.::..:...:||||:.|::|||.::  |.|
  Rat   219 GVGSLSQSTIC-------------------RFESLTLSHNNMIALKPVLQAWLEEAEAAY--REK 262

  Fly  1209 SGQNHLTDYIGVEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWF 1273
            :.:..|     ...|:::::|||........|.|:|.....||..:|..:|.:|..::.|:|:||
  Rat   263 NSKPEL-----FNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWF 322

  Fly  1274 CNKRQALK 1281
            ||:||..|
  Rat   323 CNQRQKQK 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm3NP_001188885.2 Pou 1108..1200 CDD:473999 31/96 (32%)
Homeodomain 1226..1282 CDD:459649 20/56 (36%)
Pou4f3NP_001102359.1 POU-IV box. /evidence=ECO:0000250|UniProtKB:Q15319 56..65 0/8 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 91..112 4/32 (13%)
POU 179..256 CDD:197673 31/95 (33%)
Homeodomain 275..331 CDD:459649 20/56 (36%)

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