Protein Alignment pdm3 and nub

DIOPT Version :9

• Sequence 1: NP_001188885.2
• Gene: pdm3 / 35813
• FlyBaseID: FBgn0261588
• Length: 1292
• Species: Drosophila melanogaster
• Sequence 2: NP_001097153.1
• Gene: nub / 34669
• FlyBaseID: FBgn0085424
• Length: 961
• Species: Drosophila melanogaster
• Alignment Length: 1160
• Identity: 235/1160 - (20%)
• Similarity: 384/1160 - (33%)
• Gaps: 399/1160 - (34%)

  Fly   273 HSLHHHHHHHHH---------------PHHSSRSNNNDDEMEITDGHALLSPPPPSHSH---SHS 319
            |..||.|.||||               .||..:.:....:.::...|...|.|....|:   .|.
  Fly    28 HHPHHSHRHHHHQQSQQQQLHQQQQQQQHHHQQQHQLLLQQQLLQQHVANSSPLQHLSNLFGQHL 92

  Fly   320 PFDSKDHVKELEFYKNLAAKAASLANQHSPPPMPLPLPLPMQIDGEEDENEGEGEGEGEAEEQSA 384
            |..|..|:...|:::                                             ::|..
  Fly    93 PTHSLQHLIAAEYWQ---------------------------------------------QQQQQ 112

  Fly   385 EVMRLRREEQAQAKAFAAHLNGTMQDMINLQKLQNLATLQQQQQQQQQ-------HPHPHHGHQH 442
            ....::.|...|:.|..:..:.|.|..:|.  ..:|..|||.....::       .|.|
  Fly   113 PAATIKSEPTTQSVAATSVFSFTPQQHVNF--AASLVALQQNDALPEETMATATATPTP------ 169

  Fly   443 HHHHPATAAALASLQGLAASVFNSPLNLSVGGEPVATTGPSVA-----PTSPTHNGGKSKTAKGG 502
                    |..||....||:|..||...:....|.||...:..     ....::|||..:.|..|
  Fly   170 --------ATTASGAATAAAVATSPAAATTLKAPTATQAAATMDDIDDDDDDSNNGGHMQNAGVG 226

  Fly   503 SSGNGSG---GSSAN-----------SGTSSAQQQQQPDNPSSSSSPHHPLSASSLANVLAAATA 553
            :.....|   |:.||           .||.:|......|..::.||..  ||:|..::.|.:..:
  Fly   227 NFKFEPGQQLGTPANEAVLTSSEENKDGTLTAVDTNMRDVSANHSSSF--LSSSPASSTLVSCHS 289

  Fly   554 SPPPSLQAPPASAQMPQLILASGQLVQGVQGAQLLIPTAQGIAVQTILTIPVSPQIPTTEQFLPN 618
            ..||          :|                 ||.....|........:.:..::.:.::::
  Fly   290 PSPP----------LP-----------------LLADQDDGTRRMRDKKLTLELKLQSCDEYV-- 325

  Fly   619 AFGAFASYQQQQQQQQQQRDLLPPSLAALQHATALPQLAQTPTNLLKPNLFSTGVQQLLTALHPE 683
                       :|.:.:..:.|.|:..|..:|.                          :.||.:
  Fly   326 -----------EQPKDKGAERLQPAQIANDNAP--------------------------SPLHLK 353

  Fly   684 LFAAAAATHQQQQQQQQQQVQQQREREREREREREREREREREQHLGIGHLPHSHLAADLR---- 744
            |        ::|.:|:|..|             :::..|.........|||  ::.:.|:|
  Fly   354 L--------EEQDEQEQADV-------------KDKVLELTGAAVALYGHL--NNASKDVRDLEQ 395

  Fly   745 ----------RSAERSPTAGSP----------TGGSPGLAAKGPQPPPPGAAFLLQQQL------ 783
                      ....|||   ||          ...|.|.::...:.|...|..|..||.
  Fly   396 CLKLQDPNDISRLSRSP---SPLQSNASDCDDNNSSVGTSSDRCRSPLSPALSLSHQQAKRQLMS 457

  Fly   784 --------HIKPETQTHLHHHLQTQ-----STSAVSSTLPQISLRHPDELTAPQMDLKPLELSAS 835
                    |..|....||:||...|     ..:..:..|...:.||..:  :|...:|    ||:
  Fly   458 LQPHPAHHHHNPHHLNHLNHHQYKQEEDYDDANGGALNLTSDNSRHSTQ--SPSNSVK----SAT 516

  Fly   836 TSP------PAPPPRHHFGHSLRGSSTVSPKHSPQGRMGGSGGSTTTGMNLSQHHERHDRLERLE 894
            .||      |:|.|           ..:||..:|.|     .||||.
  Fly   517 ASPVPVISVPSPVP-----------PMISPVLAPSG-----CGSTTP------------------ 547

  Fly   895 RQERHERRSHTPTATATRASVSSSSSAGHHGGSLPSGRLSPPSSAP---SNSAANSISDRGYTSP 956
                    :....|.|..|:|:|:..:|          :||..:.|   |..|..:.:..|..:|
  Fly   548 --------NSMAAAAAAAAAVASTMGSG----------ISPLLALPGMSSPQAQLAAAGLGMNNP 594

  Fly   957 LFR-THSPQG----HALSLGGSPRLERDY------LGNGPSSGTATSTSSCGAPTAAGSSATANV 1010
            |.. :.|||.    |.|.......|.:.:      |.:| |.|.|....:..|..||......:.
  Fly   595 LLTGSLSPQDFAQFHQLLQQRQVALTQQFNSYMELLRSG-SLGLAQDDPALTAQVAAAQFLMQSQ 658

  Fly  1011 LSSINRLNAS------------NGELTITKSLGAPTATATRASSASP-RDDSPGPGPSTSSVSHM 1062
            |.::::.:..            :..|.:...:.....::|..|..|| ...||...|......|.
  Fly   659 LQALSQASQQLQALQKQQQRQVDEPLQLNHKMTQQPRSSTPHSIRSPIAIRSPASSPQQLHHHHH 723

  Fly  1063 QPLKLSPSSRSEPPHLSPNGNDNDNDLLMDSPNEPT----INQATT------------------- 1104
            .||:::|.|.:....||.          |.:|:.||    ::|.||
  Fly   724 HPLQITPPSSAASLKLSG----------MLTPSTPTSGTQMSQGTTTPQPKTVASAAAARAAGEP 778

  Fly  1105 NVVDGIDLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSSALAAQMYAAQLST 1169
            :..:..||:|:::|||.||.||:.||.||..||.|:....|..:||:.|
  Fly   779 SPEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTI---------------- 827

  Fly  1170 QQQNMFEKLDITPKSAQKIKPVLERWMKEAEESHWNRYKSGQNHLTDYIGVEPS--------KKR 1226
               :.||.|:::.|:..|:||:|::|:.:|:     |.......:.|...::.:        ::|
  Fly   828 ---SRFEALNLSFKNMCKLKPLLQKWLDDAD-----RTIQATGGVFDPAALQATVSTPEIIGRRR 884

  Fly  1227 KRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALK 1281
            |:|||........|...|..|..|:..|||.||.:|..|:||:|:||||:||..|
  Fly   885 KKRTSIETTIRGALEKAFLANQKPTSEEITQLADRLSMEKEVVRVWFCNRRQKEK 939

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pdm3	NP_001188885.2	Pou	1108..1200	CDD:304656	30/91 (33%)
		Homeobox	1228..1281	CDD:278475	23/52 (44%)
nub	NP_001097153.1	DUF4472	315..>399	CDD:291409	18/145 (12%)
		POU	791..855	CDD:197673	27/82 (33%)
		Homeobox	886..939	CDD:278475	23/52 (44%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3802
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR11636
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	3	2.910