DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm3 and pou2f1b

DIOPT Version :10

Sequence 1:NP_001188885.2 Gene:pdm3 / 35813 FlyBaseID:FBgn0261588 Length:1292 Species:Drosophila melanogaster
Sequence 2:XP_068079395.1 Gene:pou2f1b / 323702 ZFINID:ZDB-GENE-030131-2422 Length:702 Species:Danio rerio


Alignment Length:478 Identity:117/478 - (24%)
Similarity:186/478 - (38%) Gaps:134/478 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   853 GSSTVSPKHSPQGRMGG----------SG----GSTTTGMNLS-QHHERHDRLERLERQERHERR 902
            |:::......|..||..          ||    |:.|.|::.. |..:....:.....|...::.
Zfish     5 GAASQDESSGPDSRMSNPSETSKCAMESGDENTGAQTNGLDFQRQTVQTTSAITNAHAQALLQQL 69

  Fly   903 SHTPT--------ATATRASVSSSSSAGHH----GGSLPSGRLSPPSSAPSNSAANSISDRGYTS 955
            :.||.        |.|...:.:...|||..    |.|:.:...:|.:..|       :|.....:
Zfish    70 TLTPAQQQLLLQQAQAQLLAAAVQHSAGQQSSTTGASISASAATPITQIP-------LSQPIQIT 127

  Fly   956 PLFRTHSPQGHALSLGGSPRLERDYLGNGPSSGTATSTSSCG---APTAAGSSATANVLSSINRL 1017
            |.......|...|:|       :.::...|....||......   :.|..|..:.....:.:.:|
Zfish   128 PQLLQQQQQQQNLNL-------QQFVLVQPGHPIATQLQPAQFIISQTPQGQQSLLQAQNLLTQL 185

  Fly  1018 NASNGELTITK---SLGAPTATATRASSASPRDDSPGPGPSTSSVSHMQPLKLSPSSRSEPPHLS 1079
            ..|...|..|:   :|....||.||..:|:|          ..|::|.|         :.|.|  
Zfish   186 PQSQANLLQTQPSITLATQPATPTRTIAATP----------IQSLAHTQ---------TTPKH-- 229

  Fly  1080 PNGNDNDNDLLMDSPN--EPTINQATTNVVDGIDLDEIKEFAKAFKLRRLSLGLTQTQVGQALSV 1142
                       ||:|:  ||:            ||:|:::|||.||.||:.||.||..||.|:..
Zfish   230 -----------MDTPSLEEPS------------DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGK 271

  Fly  1143 TEGPAYSQSAICSSALAAQMYAAQLSTQQQNMFEKLDITPKSAQKIKPVLERWMKEAEESHWNRY 1207
            ..|..:||:.|                   :.||.|:::.|:..|:||:||:|:.:|        
Zfish   272 LYGNDFSQTTI-------------------SRFEALNLSFKNMCKLKPLLEKWLNDA-------- 309

  Fly  1208 KSGQNHLTDYIGVEPS-------------KKRKRRTSF-TPQALELLNAHFERNTHPSGTEITGL 1258
            ...:|..:|.....||             ::||:|||. |...:.|..:..|:|..|:..|||.:
Zfish   310 VCAENQTSDQALSSPSSLGSPGLGMEGLNRRRKKRTSIETNIRVALEKSFLEQNQKPTSEEITMI 374

  Fly  1259 AHQLGYEREVIRIWFCNKRQALK 1281
            |.||..|:||||:||||:||..|
Zfish   375 ADQLNMEKEVIRVWFCNRRQKEK 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm3NP_001188885.2 Pou 1108..1200 CDD:473999 31/91 (34%)
Homeodomain 1226..1282 CDD:459649 28/57 (49%)
pou2f1bXP_068079395.1 POU 236..309 CDD:197673 33/103 (32%)
Homeodomain 341..398 CDD:459649 28/57 (49%)
POU2F1_C 409..702 CDD:437368
Blue background indicates that the domain is not in the aligned region.

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