DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm3 and pou3f1

DIOPT Version :10

Sequence 1:NP_001188885.2 Gene:pdm3 / 35813 FlyBaseID:FBgn0261588 Length:1292 Species:Drosophila melanogaster
Sequence 2:NP_571236.1 Gene:pou3f1 / 30398 ZFINID:ZDB-GENE-980526-372 Length:368 Species:Danio rerio


Alignment Length:398 Identity:112/398 - (28%)
Similarity:160/398 - (40%) Gaps:110/398 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   937 SSAPSNSAANSISDRGYTSPLFRTHSPQGHALSLGGSPRLERDYLGNGPSSGTATSTSSCGAPTA 1001
            :|.|||...:..|||.:....:|......|           .:||     .|.||:|   |.|.:
Zfish    12 NSLPSNPLMHPDSDRMHQGTTYREVQKMMH-----------HEYL-----QGLATNT---GHPMS 57

  Fly  1002 AGSSATANVLSSINRLNASNGELTITKSLGAPTATATRASSASPRDDSPG---------P----- 1052
                     |:....|..||.:.|....:|  .|...:||..|..|...|         |     
Zfish    58 ---------LTHHQWLPTSNTDWTSGTHIG--QAEHNKASVQSREDLGNGYHRSHLVHQPTQNSH 111

  Fly  1053 ----GPSTSSVSHMQPLKLSPSSRS-------------------------EPPHLSPNGNDNDND 1088
                .|:|:  .|:.|  |||:|..                         :|.|.....:||.  
Zfish   112 HGSWAPTTT--HHLSP--LSPASNGHQSLVYSQTGYTMLSPQPSLHHGLRDPLHDDAGSHDNQ-- 170

  Fly  1089 LLMDSPNEPTINQATTNVVDGIDLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAI 1153
              |:||.:|..:....:..|....|::::|||.||.||:.||.||..||.||....|..:||:.|
Zfish   171 --MESPQQPFSHHQDHSDEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTI 233

  Fly  1154 CSSALAAQMYAAQLSTQQQNMFEKLDITPKSAQKIKPVLERWMKEAEESHWNRYKSGQNHLTDYI 1218
            |                   .||.|.::.|:..|:||:|.:|::|.:.:      :|.....|.|
Zfish   234 C-------------------RFEALQLSFKNMCKLKPLLNKWLEETDSN------TGSPTNLDKI 273

  Fly  1219 GVEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALKNT 1283
            ..: .:|||:|||........|..||.:...||..|||.||..|..|:||:|:||||:||..|  
Zfish   274 AAQ-GRKRKKRTSIEVGVKGALENHFLKCPKPSAHEITTLAGTLQLEKEVVRVWFCNRRQKEK-- 335

  Fly  1284 VRMMSKGM 1291
             ||...|:
Zfish   336 -RMTPVGV 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm3NP_001188885.2 Pou 1108..1200 CDD:473999 32/91 (35%)
Homeodomain 1226..1282 CDD:459649 26/55 (47%)
pou3f1NP_571236.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..28 7/15 (47%)
AF-4 <46..>177 CDD:461550 34/152 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 69..88 5/20 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 100..134 9/37 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 147..193 9/49 (18%)
POU 187..261 CDD:197673 32/92 (35%)
Homeodomain 280..336 CDD:459649 27/58 (47%)

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