DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pdm3 and pou3f2b

DIOPT Version :9

Sequence 1:NP_001188885.2 Gene:pdm3 / 35813 FlyBaseID:FBgn0261588 Length:1292 Species:Drosophila melanogaster
Sequence 2:NP_571235.1 Gene:pou3f2b / 30397 ZFINID:ZDB-GENE-980526-370 Length:378 Species:Danio rerio


Alignment Length:443 Identity:116/443 - (26%)
Similarity:171/443 - (38%) Gaps:109/443 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   856 TVSPK--HSPQGRMGGSGGSTTTGMNLSQHHERHDRLERLERQERHERRSHTPTATATRASVSSS 918
            |.||.  ||..|.|             .|.....|....|:.....:..|| |.:.|.:...:.|
Zfish    13 TSSPSIVHSEPGSM-------------QQATAYRDAQTLLQSDYSLQSNSH-PLSHAHQWITALS 63

  Fly   919 SSAGHHGGSLPSGR--LSPPSSAPSNSAANSISDRGYTSPLFRTHSPQGHALSLGGSPRLERDYL 981
            ...|....|.|.|.  :.|...:|.:...||.:.:..:.|                 |.|.....
Zfish    64 HGEGGPWSSSPLGEQDIKPAVQSPRDEMHNSSNLQHQSRP-----------------PHLVHQTH 111

  Fly   982 GNGPSSGTATSTSSCGAPTAAGSSATANVLS----SINRLNASNGELTITKSLGAPTATATRASS 1042
            ||...|....:|::...|:.|.|:..:.:.|    |:|.|...:|:            .....|.
Zfish   112 GNHHDSRAWRTTTAAHIPSMATSNGQSLIYSQPSFSVNGLIPGSGQ------------GIHHHSM 164

  Fly  1043 ASPRDDSPGPGPSTSSVSHMQPLKLSPSSRSEPPHLSPNGNDNDNDLLMDSPNEPTINQATTNVV 1107
            ....:|...|..|    .|..|    ||......|.|.:.:.::     |:|..           
Zfish   165 RDAHEDHHSPHLS----DHGHP----PSQHQHQSHQSHHDHSDE-----DTPTS----------- 205

  Fly  1108 DGIDLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSSALAAQMYAAQLSTQQQ 1172
                 |::::|||.||.||:.||.||..||.||....|..:||:.||                  
Zfish   206 -----DDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTIC------------------ 247

  Fly  1173 NMFEKLDITPKSAQKIKPVLERWMKEAEESHWNRYKSGQNHLTDYIGVEPSKKRKRRTSFTPQAL 1237
             .||.|.::.|:..|:||:|.:|::||:.:      ||.....|.|..: .:|||:|||......
Zfish   248 -RFEALQLSFKNMCKLKPLLNKWLEEADST------SGSPTSLDKIAAQ-GRKRKKRTSIEVSVK 304

  Fly  1238 ELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALKNTVRMMSKG 1290
            ..|.:||.:...|:.:|||.||..|..|:||:|:||||:||..|   ||...|
Zfish   305 GALESHFLKCPKPAASEITSLADSLQLEKEVVRVWFCNRRQKEK---RMTPPG 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm3NP_001188885.2 Pou 1108..1200 CDD:304656 31/91 (34%)
Homeobox 1228..1281 CDD:278475 23/52 (44%)
pou3f2bNP_571235.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..28 7/27 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 86..118 8/48 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 151..205 14/78 (18%)
POU 200..274 CDD:197673 33/113 (29%)
Homeobox 295..348 CDD:278475 23/52 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 347..378 4/11 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.