DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm3 and pou3f3b

DIOPT Version :10

Sequence 1:NP_001188885.2 Gene:pdm3 / 35813 FlyBaseID:FBgn0261588 Length:1292 Species:Drosophila melanogaster
Sequence 2:NP_958855.2 Gene:pou3f3b / 30321 ZFINID:ZDB-GENE-980526-140 Length:443 Species:Danio rerio


Alignment Length:447 Identity:124/447 - (27%)
Similarity:175/447 - (39%) Gaps:105/447 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   852 RGSSTVSPKHSP--QGRMGGSGGSTTTGMNLSQHHERHDRLERLERQERHERRSHTPTATATRAS 914
            ||..||....|.  ||.|..|.|    |..||..|:....|..              .|.|..|:
Zfish    45 RGDPTVKMVQSDFMQGAMAASNG----GHMLSHAHQWVTSLPH--------------AAAAAAAA 91

  Fly   915 VSSSSSAGHHGGSLPSGRLSPP--SSAPSNSAANSISDRGYTSPLFRTHSPQGHALSLGGSPRLE 977
            ..:::.||....|.|.|....|  ....:||..:.:            ||  |.||. ..:|.| 
Zfish    92 AVAAAEAGSPWSSSPVGMTGSPQQQDVKNNSGRDDL------------HS--GTALH-HRAPHL- 140

  Fly   978 RDYLGNGP---SSGTATSTSSCGAPTAAGSSATANVLSSINRLNASNGELTITKSLGAPTATATR 1039
                  ||   .:|...||::...|:..||......|     :.:..|..|:...| :|..:.:.
Zfish   141 ------GPHQTHAGAWGSTTAAHIPSLTGSQQQQQSL-----IYSQPGGFTVNGML-SPPGSQSL 193

  Fly  1040 ASSASPRDDSPGPGPSTSSVSHMQPLKLSPSSRSEPPHLSPNGNDNDNDLLMDSPNEPTINQATT 1104
            ......|.|:|....|:....|..     .....:..|...|.:|..:|  .|:|..        
Zfish   194 VHPGLVRGDTPELDHSSHHHHHHH-----QHQHHQQAHHGVNSHDPHSD--EDTPTS-------- 243

  Fly  1105 NVVDGIDLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSSALAAQMYAAQLST 1169
                    |:::.|||.||.||:.||.||..||.||....|..:||:.||               
Zfish   244 --------DDLEHFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTIC--------------- 285

  Fly  1170 QQQNMFEKLDITPKSAQKIKPVLERWMKEAEESHWNRYKSGQNHLTDYIGVEPSKKRKRRTSFTP 1234
                .||.|.::.|:..|:||:|.:|::||:.|      :|.....|.|..: .:|||:|||...
Zfish   286 ----RFEALQLSFKNMCKLKPLLNKWLEEADSS------TGSPTSIDKIAAQ-GRKRKKRTSIEV 339

  Fly  1235 QALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALKNTVRMMSKGM 1291
            .....|.:||.:...||..|||.||..|..|:||:|:||||:||..|   ||...|:
Zfish   340 SVKGALESHFLKCPKPSAQEITSLADNLQLEKEVVRVWFCNRRQKEK---RMTPPGV 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm3NP_001188885.2 Pou 1108..1200 CDD:473999 31/91 (34%)
Homeodomain 1226..1282 CDD:459649 26/55 (47%)
pou3f3bNP_958855.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 21..40
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 100..150 16/71 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 182..244 13/85 (15%)
POU 238..312 CDD:197673 33/108 (31%)
Homeodomain 331..387 CDD:459649 27/58 (47%)
Blue background indicates that the domain is not in the aligned region.

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