Protein Alignment pdm3 and Pou5f1

DIOPT Version :9

• Sequence 1: NP_001188885.2
• Gene: pdm3 / 35813
• FlyBaseID: FBgn0261588
• Length: 1292
• Species: Drosophila melanogaster
• Sequence 2: NP_001009178.1
• Gene: Pou5f1 / 294562
• RGDID: 1359491
• Length: 352
• Species: Rattus norvegicus
• Alignment Length: 378
• Identity: 97/378 - (25%)
• Similarity: 142/378 - (37%)
• Gaps: 113/378 - (29%)

  Fly   921 AGHHGGSLPSGRLSPPSSAPSNSAANSISDRGYTSPLFRTHSPQGHALSLGGSPRLERDYLGNGP 985
            |||.....   ..|||......||.   .:.|:..|  ||.      ||..|.|        :||
  Rat     2 AGHLASDF---AFSPPPGGGDGSAG---LEPGWVDP--RTW------LSFQGPP--------SGP 44

  Fly   986 SSGTATST----------SSCGAPTAAGSSATANVLSSINRLNASNGELTITKSLGAPTATATRA 1040
            ..|..:..          ..||.....|...                .|.:...:|..|......
  Rat    45 GIGPGSEVLGISPCPPAYEFCGGMAYCGPQV----------------GLGLVPQVGVETLQPEGQ 93

  Fly  1041 SSASPRDDSPG--PGPSTSSVSHMQPLKLSPSSRSEPPHLSPNGNDNDNDLLMDSPNEPTINQAT 1103
            :.|....:|.|  .||.|:..|.::..|:.|                       ||.|....:|.
  Rat    94 AGARVESNSEGASSGPCTARPSAVKLEKVEP-----------------------SPEESQDMKAL 135

  Fly  1104 TNVVDGIDLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSSALAAQMYAAQLS 1168
            ..        |:::|||..|.:|::||.||..||..|.|..|..:||:.||
  Rat   136 QK--------ELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTIC-------------- 178

  Fly  1169 TQQQNMFEKLDITPKSAQKIKPVLERWMKEAEESHWNRYKSGQNHLTDYIGVE---PSKKRKRRT 1230
                 .||.|.::.|:..|::|:||:|::||:.:         .:|.:....|   .::||| ||
  Rat   179 -----RFEALQLSLKNMCKLRPLLEKWVEEADNN---------ENLQEICKSETLVQARKRK-RT 228

  Fly  1231 SFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALKNT 1283
            |...:....|...|.:...||..:||.:|.|||.||:|:|:||||:||..|.:
  Rat   229 SIENRVRWNLENMFLQCPKPSLQQITSIAKQLGLERDVVRVWFCNRRQKGKRS 281

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pdm3	NP_001188885.2	Pou	1108..1200	CDD:304656	29/91 (32%)
		Homeobox	1228..1281	CDD:278475	23/52 (44%)
Pou5f1	NP_001009178.1	POU	131..205	CDD:197673	30/100 (30%)
		Homeobox	226..280	CDD:395001	24/54 (44%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3802
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.810